Pairwise Alignments

Query, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

Subject, 626 a.a., RNA-directed DNA polymerase from Dickeya dianthicola ME23

 Score =  155 bits (393), Expect = 3e-42
 Identities = 127/380 (33%), Positives = 176/380 (46%), Gaps = 78/380 (20%)

Query: 32  RDMWGWLTDLRVLRHAWQRVASNKGGRTAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAY 91
           +D+W           A+  + SN G  T G++  T+  +   S  R ++ L   + SG+Y
Sbjct: 34  KDLWA---------QAYANIYSNSGAITRGINNNTMDEM---SVDR-IISLIHLIDSGSY 80

Query: 92  RPSPARRKLIPK-AGKP-GQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPG 149
            P P RR  IPK A KP G+ RPLGIPT  D++ Q   ++LLE I+E  F   SYGFRP 
Sbjct: 81  IPKPCRRTHIPKDARKPNGKKRPLGIPTGDDKLTQEVMRMLLEEIYEPVFSDWSYGFRPK 140

Query: 150 RNTHGALEYIRRAALPQKRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGD 209
           R+ H AL+ IR      K             WV + DIKG FDNI+H  LL+ + KRI D
Sbjct: 141 RSCHSALKEIRNGWKGTK-------------WVCDVDIKGYFDNIDHDLLLKFLSKRIAD 187

Query: 210 RRVVRLVGLFLKAGVLTEDQFLRTDAGTPQGGIISPLLANIALSAIEE-RYERWTYHRKK 268
            + + L+   LKAG L   ++  T +GTPQGGIISP+LAN+ L  ++E    R T   K 
Sbjct: 188 NKFLALLKKLLKAGYLDNWRYFGTHSGTPQGGIISPILANVFLHELDEFMKNRITEFGK- 246

Query: 269 TQARRKSN-------------------GVAAAASARDSDRIA------------------ 291
              RRK N                   G  A+    D  +I                   
Sbjct: 247 -GGRRKPNPIYKRALQNRANRIKWIRQGFGASGMPADEQKIQKWKHEADELEKQLRTLSS 305

Query: 292 --------GRCVYLPVRYADDFVVLVSGSLEEAMAEKSALADYLIKTTGLTLLPEKTKVT 343
                    R  Y  VRYADDF++ V GS  EA      + D++     L +  EK+ + 
Sbjct: 306 VIMDDTEFKRMRY--VRYADDFLIGVIGSKGEAKKIMEEVVDFVESELHLEISKEKSGII 363

Query: 344 AMTEGFEFLGFRFSVHWDKR 363
              +GF FLG+      +++
Sbjct: 364 DPKKGFTFLGYEIKTRRERK 383