Pairwise Alignments

Query, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

Subject, 449 a.a., Group II intron-encoded protein LtrA from Alteromonas macleodii MIT1002

 Score =  142 bits (359), Expect = 2e-38
 Identities = 116/407 (28%), Positives = 190/407 (46%), Gaps = 68/407 (16%)

Query: 47  AWQRVASNKGGRTAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPARRKLIPKAGK 106
           AW++V +NKG   AG+DGMT+      +       +  +LRSG Y+PSP +R  I K   
Sbjct: 41  AWKQVRANKGA--AGMDGMTIDDFPAWANAGNWKRVMTELRSGQYQPSPVKRVEIDKPD- 97

Query: 107 PGQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRRAALPQ 166
            G  R LGIPTI DRV+Q A   +L PIF+  F   S+GFRP RN   A++ +       
Sbjct: 98  -GGKRQLGIPTIVDRVIQQAIAQVLTPIFDPTFSDNSFGFRPHRNGQQAVKQVNSIIKTG 156

Query: 167 KRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVGLFLKAGVLT 226
           +R            + ++ D+   FD +NH  L+  +  ++ D+R+++L+  +L+AG+L 
Sbjct: 157 RR------------FAVDVDLSKFFDRVNHDLLMTYLGYKVKDKRLLKLIKRYLRAGILC 204

Query: 227 EDQ-----FLRTDAGTPQGGIISPLLANIALSAIEERYERWTYHRKKTQARRKSNGVAAA 281
           + +     +  +  G PQGG +SPLLANI L  +++  E+  +                 
Sbjct: 205 KTKGDNQLYSESREGVPQGGPLSPLLANIMLDPLDKELEKRGHEF--------------- 249

Query: 282 ASARDSDRIAGRCVYLPVRYADDFVVLVSGSLEEAMAEKSALADYLIKTTGLTLLPEKTK 341
                             RYADDF +LV  +        ++++ +L     L +   K+ 
Sbjct: 250 -----------------ARYADDFTILVK-TPRSGERVLNSISRFLCHRLKLVVNTTKSH 291

Query: 342 VTAMTEGFEFLGFRFSVHWDKRYGYGPRVEIPKAKAANLRHKVKQLTQRDSISVSLGEKL 401
           V   +E  +FLGF F            R++         + +V++LT R +  VS+  +L
Sbjct: 292 VVKTSES-KFLGFTFK---------AGRIQWHPKTLMKFKQQVRRLTNR-NWGVSMQYQL 340

Query: 402 RGVNAITSGWANYYRYCVGAGRVFVALDWYI--GLRLYCWLHKKRPK 446
             ++    GW NY+    G  R  V LD +I   +R+  W   ++P+
Sbjct: 341 FKLSQYLRGWINYFGIASGYQRC-VELDHWIRRRVRMAYWRQWRKPR 386