Pairwise Alignments

Query, 316 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  173 bits (438), Expect = 6e-48
 Identities = 103/320 (32%), Positives = 172/320 (53%), Gaps = 9/320 (2%)

Query: 5   VLSLVLSRLLIAVITLVIVSFAVFFATTLLPGDTASILLGQAATPEAVEGLRKAMHLDEP 64
           +++ VL RL+ AVI ++ V+F  F     + GD    LLGQ A P+ +  LR A+ LD+P
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQDAKPDQIRELRAALGLDQP 59

Query: 65  AIFRFLRWIVGLLQGDLGTSYANEMPVKDLIGGRFVNTLQLAGVTALFSVPIALTLGITS 124
              +F  ++V   QG+ G S      V  LIG RF  TL+LA V A+ ++ I + +G+ +
Sbjct: 60  FFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVYT 119

Query: 125 AMLRGSPYDRIVTVLTIGVISVPEFMIATSAVLVFAVYLKWLPALSFANEV-----TS-- 177
           A+ RG+   +    +++  +S+P F+I    +LVFAV L W P+      V     TS  
Sbjct: 120 ALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWTSGL 179

Query: 178 -MTDLLRVYAMPVITLTFVISAQMIRMTRAAVIETLNTPYVEMALLKGASRSRMVFRHAL 236
              D  +   +P +TL       ++R+ RA ++E L T Y++ A  +G S   + F HAL
Sbjct: 180 FSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHAL 239

Query: 237 PNALGPIVNAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMVFCLG 296
            N L P++    L L  L+   II E++F +PG+  L + AV+  D+P++ +   +  L 
Sbjct: 240 KNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALI 299

Query: 297 YLLLITTADIIAILSNPRLR 316
           ++++    D++  + +PRLR
Sbjct: 300 FVVINLVVDLLYFVVDPRLR 319