Pairwise Alignments

Query, 316 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  184 bits (466), Expect = 3e-51
 Identities = 105/312 (33%), Positives = 165/312 (52%), Gaps = 2/312 (0%)

Query: 5   VLSLVLSRLLIAVITLVIVSFAVFFATTLLPGDTASILLGQAATPEAVEGLRKAMHLDEP 64
           +L  V+ RLL A  TL I   AVFF   L+PGD A++LLG  A   ++  L + + LD+ 
Sbjct: 1   MLRFVVRRLLAAAPTLFISGAAVFFLIRLIPGDPAALLLGDQADAASLADLHRRLGLDQG 60

Query: 65  AIFRFLRWIVGLLQGDLGTSYANEMPVKDLIGGRFVNTLQLAGVTALFSVPIALTLGITS 124
              +F  W   +L GDLG S     PV  L+   FV + ++  V    +  IA+  G+ +
Sbjct: 61  LPTQFSLWFQRMLHGDLGQSIRTGEPVLSLVIDHFVVSARIVFVAVALAAAIAVPAGMLA 120

Query: 125 AMLRGSPYD-RIVTVLTIGVISVPEFMIATSAVLVFAVYLKWLPALSFANEVTSMTDLLR 183
           A  +    D  +V+  T+ ++S+P F +    + +F + L WLP + + +        L 
Sbjct: 121 AWRQNGKLDIGLVSAATV-LLSIPSFWLGLMLLYLFGLELGWLPVIGYVDFSEDPVAALT 179

Query: 184 VYAMPVITLTFVISAQMIRMTRAAVIETLNTPYVEMALLKGASRSRMVFRHALPNALGPI 243
              +PV TL    +  +IRM RA+ +E L   Y+  A  KG S   +++RHA  NA GP 
Sbjct: 180 YMVLPVATLVLHETGILIRMARASTLEVLRLDYITYARSKGLSEGAVLWRHAFRNAFGPT 239

Query: 244 VNAVALSLSYLLGGVIIVETIFNYPGIAKLMVDAVSTRDLPLIQSCAMVFCLGYLLLITT 303
              + L L  LLGG+ +VET+F  PG+ +L+VD++  RD P+IQ C +     Y+L+   
Sbjct: 240 WTLIGLVLGNLLGGIAVVETVFTIPGLGRLLVDSIFGRDYPVIQGCLLFVAFVYVLINLV 299

Query: 304 ADIIAILSNPRL 315
            D++  L +PR+
Sbjct: 300 VDLLYPLFDPRV 311