Pairwise Alignments

Query, 419 a.a., Reverse transcriptase, maturase from Sinorhizobium meliloti 1021

Subject, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

 Score =  141 bits (356), Expect = 4e-38
 Identities = 126/421 (29%), Positives = 188/421 (44%), Gaps = 74/421 (17%)

Query: 16  RRVYEAYKAVKANRGA--AGVDGQTL-EIFEKDLAANLYKIWNRMSSGTYFPPPVRAVSI 72
           R +  A++ V +N+G   AGVDG T+  I  +     L  +   + SG Y P P R   I
Sbjct: 42  RVLRHAWQRVASNKGGRTAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPARRKLI 101

Query: 73  PK--KAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGV--- 127
           PK  K G  R LG+PT+ DR+ Q   K ++EP  ++ F   SYG+RPG++   A+     
Sbjct: 102 PKAGKPGQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRR 161

Query: 128 ----------TRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLT 177
                     TR+    Y WV+E DIKG FDN+ H  LL+ +RK +     +  +  +L 
Sbjct: 162 AALPQKRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVGLFLK 221

Query: 178 APMEKNGEVIERSRGTPQGGVVSPILANLFL---HYAFDLWMTRTHPD------------ 222
           A +    + +    GTPQGG++SP+LAN+ L      ++ W                   
Sbjct: 222 AGVLTEDQFLRTDAGTPQGGIISPLLANIALSAIEERYERWTYHRKKTQARRKSNGVAAA 281

Query: 223 ---------------LPWCRYADDGLVHCQ-SEQQAEALKVELSSRL-AACGLQMHPTKT 265
                          LP  RYADD +V    S ++A A K  L+  L    GL + P KT
Sbjct: 282 ASARDSDRIAGRCVYLP-VRYADDFVVLVSGSLEEAMAEKSALADYLIKTTGLTLLPEKT 340

Query: 266 KIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQWDEFFCGYTPAVSPTALK--SMRAT 323
           K+    +           F+FLG++F      +  WD+ + GY P V     K  ++R  
Sbjct: 341 KVTAMTE----------GFEFLGFRF------SVHWDKRY-GYGPRVEIPKAKAANLRHK 383

Query: 324 IKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRSA---LSTLADYVNQKLRAWIRR 380
           +K L        +L E  + +N +  GW  YY RY   A      L  Y+  +L  W+ +
Sbjct: 384 VKQLTQRDSISVSLGEKLRGVNAITSGWANYY-RYCVGAGRVFVALDWYIGLRLYCWLHK 442

Query: 381 K 381
           K
Sbjct: 443 K 443