Pairwise Alignments

Query, 388 a.a., HlyD-family protein from Sinorhizobium meliloti 1021

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  179 bits (453), Expect = 2e-49
 Identities = 117/358 (32%), Positives = 189/358 (52%), Gaps = 13/358 (3%)

Query: 34  VGVMTVQVENVSPAHEFVGRVEALNAVDIRARVEGFLERRLFAEGQNVEKGQDLFTLERT 93
           V V TV    ++   EF GR+EA+  VD+R+RV G ++   F EG  V++G  L T++  
Sbjct: 55  VSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPA 114

Query: 94  TYELALEDAQATLVGAQT--NFDNAERQLQRNRALSQRTVSQAVIEESHAARDIARASVL 151
            Y   +E A+A +  AQ   +F  +E++ +  R    + ++Q   +E   A   A A++ 
Sbjct: 115 PYAAEVERAEAQVASAQARQSFSRSEQE-RAKRLWDDKAIAQREFDERVNAGREADANLR 173

Query: 152 SAQTRVNQAELNLGYTHIKAPIDGRIGRAAYSVGSLVS--PSSEPLARVVQTDPIRVVFS 209
           +AQ  +  A LNLGYT ++AP+ GRIGR   +VG+LV+  P +  L  +V   PI   F 
Sbjct: 174 AAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFD 233

Query: 210 VSD----RTILDLRTIAGGAGKDELAKGYALKLRLSNGEPYQQSGKLEFFGNEIDVQTGT 265
             +    R + DL T +   G+ E          L +G P+  +GKL+   N++D ++GT
Sbjct: 234 ADEQVITRALKDLPTGSSARGQIESIPVQMGTAGL-DGTPF--TGKLQLIDNQVDAKSGT 290

Query: 266 LPIRALFANAQSLLMPGQFVTVIVEPEEREERPVVPVGSVEQDREGRFVLVVDGESRAAV 325
           + +RA F N    L+PGQF  + +     +   +V   ++  D+  +FV+VV  +S+A  
Sbjct: 291 VRVRASFDNKDGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVGEDSKATY 350

Query: 326 RRIRASVQVGQNWVVEEGLQGGEKLIVEGLQRVSPGAVVEAQSVSAGDAATDTAAPAP 383
           R +     +    VV +GL+ G+++IV GLQ + PGA+V  Q V+  DA  D     P
Sbjct: 351 REVTLGASINGLRVVSKGLKAGDRVIVNGLQHIRPGALVAPQQVTM-DAKADPKQQQP 407