Pairwise Alignments

Query, 388 a.a., HlyD-family protein from Sinorhizobium meliloti 1021

Subject, 408 a.a., efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  182 bits (461), Expect = 2e-50
 Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 8/357 (2%)

Query: 28  AQTGPVVGVMTVQVENVSPAHEFVGRVEALNAVDIRARVEGFLERRLFAEGQNVEKGQDL 87
           AQ  PV  V T+ + NV     F GR+ A++  +IR  V G L +    +GQ V+ G  L
Sbjct: 55  AQAAPVT-VQTMALRNVQVWSSFSGRMRAVDFAEIRPEVSGRLTQVRINDGQTVKAGDVL 113

Query: 88  FTLERTTYELALEDAQATLVGAQTNFDNAERQLQRN-RALSQRTVSQAVIEESHAARDIA 146
           F ++   +E AL  A+A L  A+TN   A  +L R    +    ++Q + +E   A  ++
Sbjct: 114 FVIDPAPFEAALAKAEANLATARTNAVFARTELDRAVNLIKTEAIAQRLYDERANADKVS 173

Query: 147 RASVLSAQTRVNQAELNLGYTHIKAPIDGRIGRAAYSVGSLVS--PSSEPLARVVQTDPI 204
            ++VL+A+  + QA +NL + ++KAPI GR+ RA  ++G++V   P +  L  +V  D I
Sbjct: 174 HSAVLAAEAELKQAHINLDHAYVKAPIAGRVSRAEITLGNVVQAGPGAPLLTSIVSNDGI 233

Query: 205 RVVFSVSDRTILD-LRTIAGGAGKDELAKGYALKLRLSNGEPYQQSGKLEFFGNEIDVQT 263
              F V ++T +  +RT  G   K+   +   +++ +   E +   G ++ F N ID  +
Sbjct: 234 YADFEVDEQTYMKGIRTQDGSRDKE---RRIPVQITVRGDEAHPYLGTIQSFDNRIDTAS 290

Query: 264 GTLPIRALFANAQSLLMPGQFVTVIVEPEEREERPVVPVGSVEQDREGRFVLVVDGESRA 323
           GT+  RA F N    LMPG FV+V V     E   +V   ++  D+  +FV VV  + + 
Sbjct: 291 GTIRARARFDNGDGALMPGMFVSVKVASGGDEPALLVQERAIGSDQSKKFVYVVGDDGKV 350

Query: 324 AVRRIRASVQVGQNWVVEEGLQGGEKLIVEGLQRVSPGAVVEAQSVSAGDAATDTAA 380
           A R +    QV  + +V  GL+ GEK+IV+GLQ V P   V  Q  S G    D AA
Sbjct: 351 AYREVGLGPQVDGSRIVLAGLKAGEKVIVDGLQHVRPNMAVTVQEASLGTLRHDIAA 407