Pairwise Alignments

Query, 409 a.a., integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score = 70.5 bits (171), Expect = 6e-17
 Identities = 78/300 (26%), Positives = 129/300 (43%), Gaps = 25/300 (8%)

Query: 113 ASPYPLLDDYQSWLRVHRGLAERTIARHLRHL---HKLLPELGTPTLDYDAALIRNVVRE 169
           A  +PL+D +   L + +GL++ T   +   L   +  L E     ++    LI + +  
Sbjct: 3   AIDHPLIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELVNAGRELILDHLA- 61

Query: 170 WR--ERTGPADLRTITSALRSYLRFLAGVGLCRPNLDHAIPPVLQWRLSSL----PRYLA 223
           WR  +   P       S +R + R+L    L       A+ P LQ  +  L    P+ L+
Sbjct: 62  WRLEQNYKPRSTARFLSGVRGFYRYLLREKLI------AVDPTLQVDMPQLGRPLPKSLS 115

Query: 224 AADVERVIASCDQLTRGRLRDRAILLLLARLGLRAGDVAGLRLSDIEWTSGMLRLSGKAR 283
            ADVE ++A+ D       RDRA+L +L   GLR  ++  L L  +    G+LR+ GK  
Sbjct: 116 EADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGS 175

Query: 284 RQVRLPLPQDVGDALLAYIEQERPRM----HQEAVFLTMIAPYRSFAQSSHVSTIVALAL 339
           ++  +P+ ++    +  Y+   R  +      + +F ++     +     H    +    
Sbjct: 176 KERLVPMGEEAIVWVERYMRDARSELLGGRPSDVLFPSLRGEQMTRQTFWH---RIKHQA 232

Query: 340 KRAGISDPPSTGACLLRHSAATSMLRSGATLEAVGTVLRHRSLDMTAHYAKVDAAMLEQV 399
           K AGI    S     LRH+ AT +L  GA L  V  +L H  L  T  Y  V  A L+ +
Sbjct: 233 KVAGIGKALSPHT--LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDM 290