Pairwise Alignments

Query, 409 a.a., integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 338 a.a., Site-specific tyrosine recombinase XerC from Variovorax sp. SCN45

 Score = 61.2 bits (147), Expect = 4e-14
 Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 41/327 (12%)

Query: 101 QKEGVARPPLKVASPYPLLDDYQSWLRVHRGLAERTIARHLRHLHKLLPELGTPTLDYDA 160
           +  G A P +  AS +  ++ Y   +RV R LA RT+  +  HL  L        L  D 
Sbjct: 9   EPSGPATPAVSAASGW--VEKYLEHVRVERRLAARTVELYAFHLKSLTDHAAEAKLSLDH 66

Query: 161 ALIRNVVREWRERTG-----PADLRTITSALRSYLRFLAGVGLC--RPNLDHAIPPVLQW 213
               ++ R W  +       P  +  + S  RS+ R+L   GL    P  D   P   + 
Sbjct: 67  VQTAHI-RRWMAQLHAAGREPRGIALVLSCWRSFYRWLGHEGLVGFNPVQDVHAPKAGK- 124

Query: 214 RLSSLPRYLAAADVERVIASCDQLTRG--RLRDRAILLLLARLGLRAGDVAGLRLSD--- 268
               LP+ L   D  R+    D         RD AI+ +L   GLR  ++ GL       
Sbjct: 125 ---PLPKALGVDDAVRLAELYDPEADPWTEARDSAIVEMLYGCGLRVSELTGLDAQASSS 181

Query: 269 ----IEWTSGMLRLSGKARRQVRLPLPQDVGDAL------------LAYIEQERPRMHQE 312
               ++  +G   + GK  ++  +P+     +A+            LA      PR    
Sbjct: 182 ARGWVDLDAGDANVLGKGSKRRIVPMGSKASEAVRDWLAVRGDCAALATSHLRDPRA-AA 240

Query: 313 AVFLTMIAPYRSFAQSSHVSTIVALALKRAGISDPPSTGACLLRHSAATSMLRSGATLEA 372
           A+F++      S   S  V  ++     +AG++ P      +LRHS A+ +L+S + L A
Sbjct: 241 ALFISAKGVRMS---SQAVWKLLRERSLKAGLAAPVHPH--MLRHSFASHVLQSSSDLRA 295

Query: 373 VGTVLRHRSLDMTAHYAKVDAAMLEQV 399
           V  +L H S+  T  Y ++D   L +V
Sbjct: 296 VQELLGHASISTTQVYTRLDFQHLAKV 322