Pairwise Alignments

Query, 222 a.a., chemotaxis protein from Sinorhizobium meliloti 1021

Subject, 561 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 20  RMAAAIEQTEALLEAAQQDSEAQYEQRSPRVAVDVSAGQSEEQAVGLVIFVLADRQFALE 79
           R  AAI       EA  Q    +  Q  P    D   G +E      V+F LA  ++ L 
Sbjct: 353 RHGAAIGAEGGAAEAGGQGDGMEPAQ--PADGPDGIGGAAER----FVVFRLAGAEYGLP 406

Query: 80  IRYVCEIVSRA-RVSPLPGMPPHACGVYDLRGQLLPVFDLRGPLDLPQ-----------E 127
           +  V E++ R   ++PLP  P    GV  LRG++LP+ D R  L+LP             
Sbjct: 407 VSAVREVLRRPDSITPLPNAPDFVAGVLTLRGEVLPLIDQRRLLNLPAADSKSGLSTSGP 466

Query: 128 ARIADDWAIVCGQERPEFLILSEAAPEISTLPLEQIRAAEPAP 170
           A +     +V G++     +L +    + T+P E+I    PAP
Sbjct: 467 AGLERGRVVVVGRDGLLVGLLVDGLSGLLTVPAERI---GPAP 506



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 48  PRVAVDVSAGQSEEQAVGLVIFVLADRQFALEIRYVCEIVSRARVSPLPGMPPHACGVYD 107
           PR A D  AG   +  +  V   +AD + AL +  V  ++    +  +P  PP   G+  
Sbjct: 9   PREA-DGRAGGETDGVLDFVTVTVADLRLALPLSAVRAVIRLPELVRIPLGPPSLDGLAH 67

Query: 108 LRGQLLPVFDLRGPLDLPQEARIADDWAIVCGQERPEFLILSEAAPEISTLPLEQIRAAE 167
             G  +PV DL G L  P  A    +  +V    R + + L   A       +  I  +E
Sbjct: 68  WHGDAVPVLDLAGALGRPGGAAPTRETRVVLVGHRGQPVGLRVDA-------MAGILRSE 120

Query: 168 PAPGKPWHWATTKIGAVILDGRRLLDD------RRFFLEDEQITASDETERTE 214
           P    P       +   +LDG  LL D      +   L D Q     ETERT+
Sbjct: 121 PDRIDPVTQEEGGLDPAMLDG--LLRDGPATILKLDALIDRQFGDPAETERTD 171



 Score = 23.9 bits (50), Expect = 0.007
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 139 GQERPEFLILSEAAPEISTLPLEQIRAAEPAPGKPWHWATTK 180
           G +R   L+   A  E + LP++++R   PAP +    A +K
Sbjct: 198 GIDRQALLVFEVAGQEFA-LPVDRVREVLPAPREVTRMARSK 238