Pairwise Alignments
Query, 1071 a.a., Diguanylate cyclase/phosphodiesterase from Sinorhizobium meliloti 1021
Subject, 1247 a.a., diguanylate cyclase from Pseudomonas simiae WCS417
Score = 413 bits (1061), Expect = e-119
Identities = 301/958 (31%), Positives = 474/958 (49%), Gaps = 69/958 (7%)
Query: 135 EETLRASEEHYRSLVDLHPQVPWTADTAGEVLE-VGPRWSELTGLGEKETLGSG-WAKAV 192
E+ LR+SE HYR LV+ + W A A V P EL G L G W +
Sbjct: 303 EQELRSSEYHYRGLVESLSAIAWEASVADFTYSYVSPHAEELLGYPRAHWLIPGFWRNII 362
Query: 193 HPQDAGALQEEWRRSLASGAPFDCEYRLLTKTGDYRWFRARAAAKRDADGKIVRWYGVLE 252
HP D + R + +YR++T G W R + ++R G++
Sbjct: 363 HPADLTRAEAYCYRETRANRDHSIDYRVITADGRCLWVRDIVSLIEHGHEPVLR--GLMI 420
Query: 253 DIDERRRAADDLRESEARFRAIADDAPVMIWVADPTG------DTSFFNRLWLET---TG 303
DI E +R + L+ SE +F ++ P M+ +A + + +F +++ L+ G
Sbjct: 421 DISEAKRTEEALQLSEQKFASVFQQCPDMLVIARLSDGCLLEVNKAFEDQIGLKAEHVVG 480
Query: 304 QTEAEALGFGWVDVIHPDDRQAVQETFFRATAGKEPVRSEYRLRRADGSWAWVIDVGQPR 363
+T E L + + PD Q VQ T R E R++G + +P
Sbjct: 481 KTATE-LNIWGIQGVGPDLLQRVQTTSIR--------NLEMPFLRSNGQAFTGLISAEP- 530
Query: 364 FSADGTFLGYVGSVLDITERRAAEIAQQEAQAFIRSIFDSSPDCVRVL-DMEGRPLLMNE 422
F D T V V DIT+ + + Q ++ F +SPD + + +G + +N+
Sbjct: 531 FQLD-TIEAIVVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLIEVND 589
Query: 423 AGRRIFGLNEGAPVTGQTWDSIGRASDADKVEAAWESVRRGKTAR-FEISVRDAGGEERC 481
RI G + T D +G D ++ + E ++R R F +R + G+ R
Sbjct: 590 GFSRITGFTSATSLDQSTLD-LGIWVDLNERKHMLELMQRDGFVRDFICHIRRSDGQIRL 648
Query: 482 MDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRHAEAAADQLSSVLESTMDSV 541
++ S P+ G +L+I RDIT+ + +++ +A ++V EST + V
Sbjct: 649 CELSSRPLPI--GDDDCMLTIARDITERQLMQEKLQQA-----------ATVFESTAEGV 695
Query: 542 MLLDADWRVRYLNENARKLLQVGD-EALGRVFWKLFPEEEEGSFAKHCREVMDRRVRSFF 600
++ D + +N ++ + EALG L + +F + + +
Sbjct: 696 LITDTRQNISAVNRAFSEITGYSEAEALGNTPRLLASGLHDSAF--YAAMWHQLTAQGHW 753
Query: 601 EDHLSSLGR-------WVEANASPTRDG-----ISIFCRDITERRRAEEDTLLAQKQMAH 648
+ +S+ + W+ +A R+ +++F DI+ + LAQ ++ +
Sbjct: 754 QGEISNRRKNGELYPSWLTISAVRNREQLITHFVAVFA-DISSLK-------LAQARLDY 805
Query: 649 MARHDMLTGLANRMFFRECFEEALN--ESNHARMAVLCLDLDGFKAVNDTLGHPAGDALL 706
A HD LTGL NR F + ALN + + AVL LDLD FK +ND+LGHP GD LL
Sbjct: 806 QAHHDPLTGLPNRTLFESRLQAALNGHQETGQQGAVLFLDLDRFKHINDSLGHPIGDLLL 865
Query: 707 RQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQRLIDTLSEPFSIEGAAA 766
+ ++ RL + +R +TVARLGGDEF I+ P + +A LA +L+ + PF
Sbjct: 866 KDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQHASDAQYLANKLLACFTPPFQAGEHEF 925
Query: 767 NVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGRGTYKLFDVAMHAQLQAHQQMKIT 826
+ SIG + PEDGT L+K AD A+Y +K+ GR + + + AQ ++
Sbjct: 926 FISASIGTSLYPEDGTDVATLVKNADAAMYRSKAKGRNRVESYTRDLTAQANERVALEHE 985
Query: 827 MRDALAKGEFELHYQPLVSLESRCVSCCEALLRWRHPERGMIAPSEFIPIAEETGLIVPI 886
+R A+ + E L+YQP +SL + + EAL+RW HP G + P FI +AEE G+I+ I
Sbjct: 986 LRRAIERDELSLYYQPKLSLATHELIGAEALIRWHHPTFGDVPPEHFIALAEENGMILQI 1045
Query: 887 GEWILGEACRQAARWPERVS----VAVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLE 942
G+W+L +ACRQ W ++VNL+ Q +H L+ + + L +LDP RLQLE
Sbjct: 1046 GDWVLEQACRQMHAWQGHFDDFGPLSVNLAGAQLRHPGLLGRIKQLLHDYQLDPGRLQLE 1105
Query: 943 ITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDL 1002
ITE ++ ++E L++L L+ LGV++A+DDFGTGYSSL YL+ P D +K+DQ+FVR L
Sbjct: 1106 ITENFIMSQAEEALDVLHQLKDLGVQLAIDDFGTGYSSLSYLKRLPLDFLKIDQSFVRGL 1165
Query: 1003 PHGKESLAIVKAVAGLGQSLGMTTSVEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAA 1060
P AIV+A+ LG S+ T EGVE Q A + +EG ++QGY+ S PLP A
Sbjct: 1166 PDDPHDAAIVRAIIALGHSMQFTIIAEGVENPAQQAFLAAEGCEQMQGYIVSLPLPPA 1223
Score = 56.2 bits (134), Expect = 1e-11
Identities = 99/405 (24%), Positives = 155/405 (38%), Gaps = 40/405 (9%)
Query: 253 DIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDT-SFFNRLWLETTGQTEAEAL- 310
+I R +LR SE +R + + + W A T S+ + E G A L
Sbjct: 295 EIARRVALEQELRSSEYHYRGLVESLSAIAWEASVADFTYSYVSPHAEELLGYPRAHWLI 354
Query: 311 -GFGWVDVIHPDDRQAVQETFFRATAGKEPVRSEYRLRRADGSWAWVIDVGQPRFSADGT 369
GF W ++IHP D + +R T +YR+ ADG WV D+ G
Sbjct: 355 PGF-WRNIIHPADLTRAEAYCYRETRANRDHSIDYRVITADGRCLWVRDI--VSLIEHGH 411
Query: 370 FLGYVGSVLDITERRAAEIAQQEAQAFIRSIFDSSPDCVRVLDM-EGRPLLMNEAGRRIF 428
G ++DI+E + E A Q ++ S+F PD + + + +G L +N+A
Sbjct: 412 EPVLRGLMIDISEAKRTEEALQLSEQKFASVFQQCPDMLVIARLSDGCLLEVNKAFEDQI 471
Query: 429 GLNEGAPVTGQTWDSIGRASDADKVEAAWESVRRGKTARFEISVRDAGGEERCMDVISAP 488
GL + V G+T + + V+ E+ + G + +ISA
Sbjct: 472 GL-KAEHVVGKTATELNIWGIQGVGPDLLQRVQTTSIRNLEMPFLRSNG-QAFTGLISA- 528
Query: 489 ITDHHGKPFR------ILSIWRDITDAKRASDEISRAQRHAEAA--ADQLSSVLESTMDS 540
+PF+ I+ + RDIT K ++ ++ A A +L D
Sbjct: 529 ------EPFQLDTIEAIVVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDG 582
Query: 541 VMLLDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEEEGSFAKHCREVMDRR--VRS 598
+++ D R + L LG W E KH E+M R VR
Sbjct: 583 LLIEVNDGFSRITGFTSATSLDQSTLDLG--IWVDLNER------KHMLELMQRDGFVRD 634
Query: 599 FFEDHLSSLG--RWVEANASP----TRDGISIFCRDITERRRAEE 637
F S G R E ++ P D + RDITER+ +E
Sbjct: 635 FICHIRRSDGQIRLCELSSRPLPIGDDDCMLTIARDITERQLMQE 679
Score = 46.6 bits (109), Expect = 1e-08
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 18/276 (6%)
Query: 40 INDAACDLLGKDRNQLIGRTDHDI-LPGEQADRIVSLDRIVLSTSEGHELEEQITTPDGT 98
+N A D +G ++G+T ++ + G Q L R+ T+ LE +G
Sbjct: 463 VNKAFEDQIGLKAEHVVGKTATELNIWGIQGVGPDLLQRV--QTTSIRNLEMPFLRSNGQ 520
Query: 99 QRTLLTKKRCVSIPAGSTQEKFVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQ-VPW 157
T L P + +VV + DIT L+ T++ L+ SEE + P +
Sbjct: 521 AFTGLISAE----PFQLDTIEAIVVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLL 576
Query: 158 TADTAGEVLEVGPRWSELTGLGEKETLGSGWAKAVHPQDAGALQEEWRRSLASGAPFDCE 217
+ G ++EV +S +TG +L D + G D
Sbjct: 577 SRQRDGLLIEVNDGFSRITGFTSATSLDQSTLDLGIWVDLNERKHMLELMQRDGFVRDFI 636
Query: 218 YRLLTKTGDYRW--FRARAAAKRDADGKIVRWYGVLEDIDERRRAADDLRESEARFRAIA 275
+ G R +R D D + + DI ER+ + L+++ F + A
Sbjct: 637 CHIRRSDGQIRLCELSSRPLPIGDDDCMLT----IARDITERQLMQEKLQQAATVFESTA 692
Query: 276 DDAPVMIWVADPTGDTSFFNRLWLETTGQTEAEALG 311
+ + + D + S NR + E TG +EAEALG
Sbjct: 693 EG----VLITDTRQNISAVNRAFSEITGYSEAEALG 724
Score = 44.3 bits (103), Expect = 6e-08
Identities = 98/489 (20%), Positives = 191/489 (39%), Gaps = 35/489 (7%)
Query: 86 HELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDITNLRRTEETLRASEEHY 145
H ++ ++ T DG R L + I G E + ++DI+ +RTEE L+ SE+ +
Sbjct: 384 HSIDYRVITADG--RCLWVRDIVSLIEHG--HEPVLRGLMIDISEAKRTEEALQLSEQKF 439
Query: 146 RSLVDLHPQVPWTADTA-GEVLEVGPRWSELTGLGEKETLGSGWAKAVHPQDAGALQEEW 204
S+ P + A + G +LEV + + GL + +G A ++ + +
Sbjct: 440 ASVFQQCPDMLVIARLSDGCLLEVNKAFEDQIGLKAEHVVGK-TATELNIWGIQGVGPDL 498
Query: 205 RRSLASGAPFDCEYRLLTKTGDYRWFRARAAAKRDADGKIVRWYGVLEDIDERRRAADDL 264
+ + + + + E L G + F +A+ I V+ DI + + L
Sbjct: 499 LQRVQTTSIRNLEMPFLRSNG--QAFTGLISAEPFQLDTIEAIVVVVRDITQLKETQQQL 556
Query: 265 RESEARF-RAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEAEALGFGWVDV---IHP 320
+ SE +F +A ++ G N + TG T A +L +D+ +
Sbjct: 557 QTSEEKFAKAFHASPDGLLLSRQRDGLLIEVNDGFSRITGFTSATSLDQSTLDLGIWVDL 616
Query: 321 DDRQAVQETFFRATAGKEPVRSEYRLRRADGSWAWVIDVGQPRFSADGTFLGYVGSVLDI 380
++R+ + E R ++ + +RR+DG +P D + + DI
Sbjct: 617 NERKHMLELMQRDGFVRDFI---CHIRRSDGQIRLCELSSRPLPIGDDDCMLTIAR--DI 671
Query: 381 TERRAAEIAQQEAQAFIRSIFDSSPDCVRVLDMEGRPLLMNEAGRRIFGLNEGAPVTGQT 440
TER+ + Q+A ++F+S+ + V + D +N A I G +E +
Sbjct: 672 TERQLMQEKLQQA----ATVFESTAEGVLITDTRQNISAVNRAFSEITGYSEAEALGNTP 727
Query: 441 WDSIGRASDADKVEAAWESVRRGKTARFEISVRDAGGEERCMDVISAPITDHHGKPFRIL 500
D+ A W + + EIS R GE + + + + +
Sbjct: 728 RLLASGLHDSAFYAAMWHQLTAQGHWQGEISNRRKNGELYPSWLTISAVRNREQLITHFV 787
Query: 501 SIWRDITDAKRASDEISRAQRHAEAAADQLSSVLESTMD-------------SVMLLDAD 547
+++ DI+ K A + H ++ ES + +V+ LD D
Sbjct: 788 AVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGQQGAVLFLDLD 847
Query: 548 WRVRYLNEN 556
R +++N++
Sbjct: 848 -RFKHINDS 855