Pairwise Alignments

Query, 1071 a.a., Diguanylate cyclase/phosphodiesterase from Sinorhizobium meliloti 1021

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  391 bits (1004), Expect = e-112
 Identities = 312/1046 (29%), Positives = 495/1046 (47%), Gaps = 74/1046 (7%)

Query: 62   DILPGEQADRIVSLDRIVLSTSEGHE-LEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKF 120
            D+LP E   R   + + V++     + +  +I  PDG+   L         P G  Q   
Sbjct: 79   DLLPEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ--- 135

Query: 121  VVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQ-VPWTADTAGEVLEVGPRWSELTGLG 179
            ++  I +IT  R  E  L  SE+ + +L  L P  +  T    G + EV   + ++ G  
Sbjct: 136  MIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWP 195

Query: 180  EKETLGSGWAKA---VHPQDAGALQEEWRRSLASGAPFDCEYRLLTKTGDYRWFRARAAA 236
              + +G    +    V+P+    + E  R   A+G P   E +    +G           
Sbjct: 196  GSQVIGKTSLELGLWVNPEQRHQIVESTR---ANGGPLIMEVQFRATSGKVH-DGILCTQ 251

Query: 237  KRDADGKIVRWYGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNR 296
              + +G +        D  ER+RA   L++S+ R     D A +  W         + + 
Sbjct: 252  GIELEG-VTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSA 310

Query: 297  LWLETTGQT-----EAEALGFGWVDVIHPDDRQAVQETFFRATAGKEPVRSEYRLRRADG 351
               +  G       E+    F  V     +  +    +     AG   +   YR++  +G
Sbjct: 311  RAAQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQIT--YRVQLENG 368

Query: 352  SWAWVIDVGQPRFSADGTFLGYVGSVLDITERRAAEIAQQEAQAFIRSIFDSSPDCVRVL 411
            +  ++    +      G  L   G++LDIT++   E     ++    S+F  SPD + V 
Sbjct: 369  TSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVT 428

Query: 412  DME-GRPLLMNEAGRRIFGLNEGAPVTGQTWDSIGR-ASDADKVEAAWESVRRGKTARFE 469
              + G+ + +N A  + FG +  A V G+T + IG  A   ++ +   + +R    +   
Sbjct: 429  RQDTGQFIEINPAFTQTFGWSS-AQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVA 487

Query: 470  ISVRDAGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRHAEAAADQ 529
            + +    G+     VIS+ +     +P  + ++ RDIT  +RA   +  ++       ++
Sbjct: 488  VVLNHRNGDPLTC-VISSRLITVDDQPCSVTTL-RDITQQQRAEAALKSSE-------EK 538

Query: 530  LSSVLESTMDSVMLLDADWRVRYLNENARKLLQVG---DEALGRVFWKLFPEEEEGSFAK 586
             +    S+ D++ + +     RYL  N       G   DE +G   +++    ++   + 
Sbjct: 539  FAKAFHSSPDAITITERH-SGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSA 597

Query: 587  HCREVMDR-RVRSFFEDHLSSLGR-------WVEANASPTR----DGISIFCRDITERRR 634
               E+ +R RV      H   LGR        VE +  P      D + +  RD+++ + 
Sbjct: 598  LLAELRERGRVH-----HREMLGRNKRGDILTVEVSVEPITLNEVDCLLLTARDVSQLKN 652

Query: 635  AEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEE--ALNESNHARMAVLCLDLDGFKA 692
            A       Q Q+ H+A HD LT L NR    +   +  AL + ++ R A+L LDLD FK 
Sbjct: 653  A-------QAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKH 705

Query: 693  VNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAII-QPLTESRDEAFRLAQRL 751
            +ND+LGHP GD +L+ ++ RL  +VR  +TVARLGGDEF ++   L  SR+      + L
Sbjct: 706  INDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVREL 765

Query: 752  IDTL----SEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGRGTYK 807
             DTL    +EP S++G    V  SIG+A  P+ GT+  +L+K ADIALY AK SGR T +
Sbjct: 766  ADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQ 825

Query: 808  LFDVAMHAQLQAHQQMKITMRDALAKGEFELHYQPLVSLESRCVSCCEALLRWRHPERGM 867
            LF   M        +M+  +R ALA+GE  LH+QP V      +   E LLRW HP+ G 
Sbjct: 826  LFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQ 885

Query: 868  IAPSEFIPIAEETGLIVPIGEWILGEACRQAARW-------PERVSVAVNLSPVQFKHRN 920
              PS+FI + EE+GLI+ +G WIL EAC   AR         +  ++ VN+SP QF+  +
Sbjct: 886  QPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQND 945

Query: 921  LVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSS 980
             V  V ++L   RL    L LEITE +++   E  +  + +L+R GV  AMDDFGTGYSS
Sbjct: 946  FVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSS 1005

Query: 981  LGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTSVEGVETEDQLAVV 1040
            L YL+  P D +K+DQ+FVRD P       IV+A+  + +SL +    EGVE  +QLA +
Sbjct: 1006 LTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFL 1065

Query: 1041 DSEGFNEVQGYLFSRPLPAAEISKLI 1066
            +  G +  QGYL SRPLP  E  +++
Sbjct: 1066 ERLGCHLYQGYLHSRPLPLPEFRQML 1091



 Score = 50.4 bits (119), Expect = 7e-10
 Identities = 79/357 (22%), Positives = 145/357 (40%), Gaps = 37/357 (10%)

Query: 314 WVDVIHPDDRQAVQETFFRATAGKEPVRS--EYRLRRADGSWAWVIDVGQPRFSADGTFL 371
           ++D++  +DR   ++ F +A    EPV     +R+R  DGS  W+   G       G   
Sbjct: 77  YLDLLPEEDRARTRQVF-QAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGR-P 134

Query: 372 GYVGSVLDITERRAAEIAQQEAQAFIRSIFDSSPDCVRVL-DMEGRPLLMNEAGRRIFGL 430
             +G + +IT +R  E A   ++    ++F  SP+ + +    +G    +N+    +FG 
Sbjct: 135 QMIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGW 194

Query: 431 NEGAPVTGQTWDSIGRASDADKVEAAWESVR-RGKTARFEISVRDAGGEERCMDVISAPI 489
             G+ V G+T   +G   + ++     ES R  G     E+  R   G+     ++    
Sbjct: 195 -PGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVH-DGILCTQG 252

Query: 490 TDHHGKPFRILSIWRDITDAKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLLDADWR 549
            +  G  F ++S + D T+ KRA   +  +Q             L+  +DS  L   DW 
Sbjct: 253 IELEGVTF-LISTFVDTTERKRAEQALKDSQER-----------LDLALDSAQLGTWDWH 300

Query: 550 V----RYLNENARKLLQVGDEALGRVFWKLF---PEEEEGSFAKHCREVMDRRVRSFFED 602
           +     Y +  A +L  +        F   F   PE E  S  +  R + +    ++   
Sbjct: 301 IPSGMLYGSARAAQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQIT 360

Query: 603 HLSSL----GRWVEANASPTRDGISIFCR------DITERRRAEEDTLLAQKQMAHM 649
           +   L     R++E+ A   RD   I  R      DIT++   E+    ++++ A +
Sbjct: 361 YRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASL 417



 Score = 26.9 bits (58), Expect = 0.008
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 29  IIKDDASRFVFINDAACDLLGKDRNQLIGRTDHDI 63
           I +  + R++ +ND  C L G   +++IG T ++I
Sbjct: 552 ITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEI 586