Pairwise Alignments

Query, 306 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 306 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  171 bits (432), Expect = 3e-47
 Identities = 101/282 (35%), Positives = 162/282 (57%), Gaps = 4/282 (1%)

Query: 3   LFIA-IFTGTIIAATPLIFAALGELVVEKSGVLNLGLEGMMLMGAAFAFWA-VIAGLPMP 60
           +F+A I  G +    P +F +LGE + EKSG +NLGLEG++++ A  AF A  ++G P  
Sbjct: 8   IFLAGIVGGALRVGVPFLFVSLGECLTEKSGRINLGLEGVLVLSAMVAFGASYLSGSPW- 66

Query: 61  VAIAAGALAGAATSLLFGVLALTFLTNQYAAGLALAIFGSGVSAFLGRGFGSAPIDALKR 120
           V + A A+AGA  + L G+L      N  A G+AL + G G++ +LG+         L  
Sbjct: 67  VGVLAAAVAGALLATLHGLLCSLPRVNDIATGIALMLLGMGLAFYLGKPLIQPQAAQLPA 126

Query: 121 VHIPFLSDIPVVGPMFFRFDPMVYLAIGMFGLITWFLYRTKGGLILRTIGESPETSHAIG 180
           + + F S+ P V     + + ++ + + +   + W   RT+ GL++R  G+S   + A+G
Sbjct: 127 IPLGFWSESPAVRSAL-QINALLPIGLVLALAMGWAFARTRAGLLVRMAGDSANATRALG 185

Query: 181 YPVIRIRYLAVLFGGLMAGLAGAYLSVAYTPLWVENMTAGKGWISLALVVFATWRPLRVL 240
           Y V  IR  A   GGL+AGL GA L++ Y   W E +++G+G I++ALV+FA W PLR +
Sbjct: 186 YSVSGIRIAATAAGGLIAGLGGASLTLFYPGSWNEGISSGQGLIAVALVIFARWSPLRCV 245

Query: 241 IGAWLFGGMTILQLQGQALGIAVPSELLSALPYLATIIVLVI 282
             A LFGG   +    Q++GI     L + +PY+ T+++LV+
Sbjct: 246 GAALLFGGAGAIGPALQSIGIGWGYHLFNIVPYVLTLLILVL 287