Pairwise Alignments

Query, 220 a.a., inner-membrane permease from Sinorhizobium meliloti 1021

Subject, 381 a.a., ABC transporter, membrane spanning protein (proline/glycine/betaine) from Agrobacterium fabrum C58

 Score =  142 bits (358), Expect = 9e-39
 Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 12/225 (5%)

Query: 1   MEIVRFIIDNLDIIGTRTIEHISIVFLAVGIAIATAVPIGVAITQSKSTADTVLYLASMM 60
           + I++      DI     + H+ +   ++  A    +P+G+   + +     VL   +++
Sbjct: 152 LSIIKEYTGRADIFWIEAVRHVELAIGSLIAATVAGIPLGILCYKVERLRAGVLNSLNIV 211

Query: 61  ITVPSIALFGLMIPLLSPIGH-----------GIGYVPAVVAVILYSQLPIIRNTYTAIT 109
            T+PSIALFGL+I  L  I             GIG  PA VA+ LYS LP++ NT   + 
Sbjct: 212 QTIPSIALFGLLIAPLGWIAATVPGAARIGIAGIGMAPAFVALFLYSLLPVVSNTVVGLA 271

Query: 110 NVDPALREAAKGMGMSTWQRLRQVEIPLAIPVIMAGVRTAVVMNIGVTAIAAYIGAGGLG 169
            V  A+REAA+G+GM+  QRL +VE PLA+PVI+ G+R  +V NIG+  IAA IG GG G
Sbjct: 272 GVSHAIREAARGLGMTPVQRLLRVEFPLAMPVILTGIRIVLVQNIGLATIAALIGGGGFG 331

Query: 170 TFISRGISQSDPRQLVTGALAVSLLAIAADLFL-ALVQRLLTSRG 213
            F+ +GI Q+    ++ G +   LL  AA + L AL+   L S G
Sbjct: 332 VFVFQGIGQTAMDLVLLGTVPTVLLGFAAAITLDALIDSNLFSAG 376