Pairwise Alignments

Query, 502 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 497 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  124 bits (310), Expect = 1e-32
 Identities = 113/388 (29%), Positives = 188/388 (48%), Gaps = 24/388 (6%)

Query: 10  AGAMVVAGWAGYAAAQSASEIKIV-LPEQPANLEPCGTIITNVGQILSRNVVEPLTIIDP 68
           A A+        A AQ   +  ++ L  +P  L+P       + +++   V E LT I+ 
Sbjct: 12  AAALTPLALPTIALAQRKKDALVIGLTLEPTGLDPTAKAGAEIAEVVLYTVFETLTKINS 71

Query: 69  KSGQPTPGLATEWKQT-DPNTWQLKLREGVKFQDGAAFDAEAVKFSIERMTGGKLTCSNI 127
             G  TP LA  W+ + D  T+  KLR GVKFQ+G  F+A++VKFS +R      T  + 
Sbjct: 72  DGGV-TPLLAESWEVSPDLKTYTFKLRRGVKFQNGEPFNAQSVKFSFDRAAAANSTNKDK 130

Query: 128 AKFGDAKLTVTPLDELTVEIKSDKPQPILPTLL--SVVMIVSPNTPADKAVNDPVGTGPF 185
             F    +    +DE TV + + + +P L  LL  +  ++V P +    A   PVGTGP+
Sbjct: 131 RTF--TNIATQVVDEHTVVLINKEIEPDLLFLLGQASAILVEPKSVETNATK-PVGTGPY 187

Query: 186 KLSSFTP-QTVVLEAFDGYWG-EKPAIAKASYVWRPESSIRAAMVETGEADLTP----SI 239
           +L ++    ++VL  +DG+ G +   I KA++ +  E + + A + + + DL P    S 
Sbjct: 188 RLDNWAKGSSIVLAKWDGWRGADTVQIRKATFRFISEPAAQTAALLSNDIDLFPHASVSR 247

Query: 240 AIQDATNPETDFAYLNSE--TTAIRIDAGFAPLDDVRIRKALNLAIDWDGL--AQLFGED 295
           ++    N +      N+    T + I+    PLDDVR+R+A++ AID   +  A + G  
Sbjct: 248 SLSQFQNDKRFQIVFNASLGKTILAINNKRKPLDDVRVRRAISAAIDRKAVIDAAVDGRG 307

Query: 296 VQRASQMVVTGINGHDDKLAPWTFDAEKARALIAEAKAAGVPVDTEIELIGRNGIYPNGT 355
           V   S   V G+ G+ D      ++ EKA+ L+AE   AGV    E+EL+      P   
Sbjct: 308 VPIGSH-YVPGLPGYVDTTGVNPYNIEKAKKLLAE---AGVKTPLELELVLPPP--PYAR 361

Query: 356 EAMEAMMAMWQDVGLNVKLTMLDVNDWL 383
           +  E + A    +G+  K+  ++   W+
Sbjct: 362 QGGELIAAQLAKIGIVAKIQNVEWAQWI 389