Pairwise Alignments

Query, 305 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 274 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  188 bits (478), Expect = 1e-52
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 8/271 (2%)

Query: 22  LTRDKLALCAAVFLLVLIVCVLVGPLFVGELAGKLGLRQRNLPPFALEHGFIYILGADTL 81
           L   ++ + +A+ LLV+ V  +  PLF         + +R   P A EH    +LG D L
Sbjct: 5   LMHRRIVMVSALVLLVIAVMAIGAPLFASADPNDTAVLERLKAPSA-EH----LLGTDEL 59

Query: 82  GRPILARLIVGAQNTLGIAAAAVFCSMALGGILGLAAGYSERWYSHVILRLADVVMSFPS 141
           GR + +R++ GA+ +L IAA     ++  G +LGL AG+  R     ++R+ D +MSFP 
Sbjct: 60  GRDMYSRIVHGARYSLAIAALTALGAVVAGTVLGLMAGFFRR-LDAPLMRVVDAMMSFPD 118

Query: 142 LLLALIVLYTLGPSMTNLVIVLAITRMPIFIRTARAEVLELRERMFVSAARSMGASTGRI 201
           +LLA+ ++  LGPS+ N V+ L +   P   R  RA  L +RE +FV A R++G  T RI
Sbjct: 119 ILLAIALVAILGPSLVNTVLALVLVYTPRVARVVRASTLVVRELLFVEAVRALGVRTSRI 178

Query: 202 LFRHIAP-LVLPTLVTIAAIDFATVILAESSLSFLGLGIQPPDFTWGAMVANGRGYLKTA 260
           L+RHI P L+ P LV ++ I FA  ILAE+ LSFLG+G+ P   TWG MVA  + Y   A
Sbjct: 179 LWRHILPNLMSPILVQVSFI-FAYAILAEAGLSFLGVGVPPEIPTWGTMVAGSQQYAHQA 237

Query: 261 WWIAFWPGLAILLTTLSLNILASWARTVADP 291
           +W+  +PGLAI+ T LSL +L    R + DP
Sbjct: 238 FWVVLFPGLAIIFTALSLQLLGDGVRDLLDP 268