Pairwise Alignments

Query, 550 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 633 a.a., dipeptide ABC transporter ATP-binding protein from Pectobacterium carotovorum WPP14

 Score =  464 bits (1194), Expect = e-135
 Identities = 259/562 (46%), Positives = 365/562 (64%), Gaps = 30/562 (5%)

Query: 4   PDKPILRIDKLTVDFLSEGDPVRAVDDVSFDVCPGETLVILGESGSGKSVSTGTVMGLID 63
           P+K ++ +  L+V F  +G    AV +++F V  GETL I+GESGSGKSV++  +M L++
Sbjct: 21  PEKRVVEVRNLSVYFEQQGQRTDAVRNLTFSVDRGETLAIVGESGSGKSVTSLALMRLVE 80

Query: 64  CPPGDIVSGSLVFDGTDLSRLDDEGRRE-----LNGRRIAMIFQDPLAYLNPVYTVGRQI 118
              G I  G ++F   D   LD  G R+     L G  +AMIFQ+P+  LNPV+ VG QI
Sbjct: 81  HAGGVIHQGDMLFRRRDGQVLDLRGARQRAMRTLRGADLAMIFQEPMTSLNPVFPVGEQI 140

Query: 119 AEVFESHGEGEGGAVRDKVVRLLERVGIPEADERIDYYPHQFSGGQRQRVMIAMAIALKP 178
           AE    H   +  A R + +R+L+ V IPEA   +D YPHQ SGG RQRVMIAMA++ KP
Sbjct: 141 AESIRLHQGMDRRAARAETLRMLDLVRIPEARNVLDRYPHQLSGGMRQRVMIAMALSCKP 200

Query: 179 DILIADEPTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIVMNGGKV 238
            +LIADEPTTALDV++QAQIL+L+R LQRE  MA+I ITHD+ V A MA+R++VM+ G+ 
Sbjct: 201 SLLIADEPTTALDVTIQAQILQLIRVLQREMEMAVIFITHDMGVVAEMAERVLVMHRGES 260

Query: 239 VESGKAEDVFTNPSHAYTRRLMSAVPHAD---------------------APKAPRNA-- 275
           VE+G    +FT P H YT+ L++AVP                        A   P++   
Sbjct: 261 VEAGSVGQIFTAPQHPYTQGLLAAVPALGSMRGQPFPEKFPLLDQRSGRIADNVPQDTVP 320

Query: 276 AQGEVLLQVAHLSKHYKLGSGPFS-PKREFRAVDDVSFTLRRGETVGIVGESGSGKSSIA 334
           AQ E +L+V++L   + + SG  +   R+  AV++VSF L  GET+ +VGESG GKS+ +
Sbjct: 321 AQSEPVLRVSNLVTRFPIRSGLLNRVTRQVHAVENVSFDLWPGETLSLVGESGCGKSTTS 380

Query: 335 RMLLRLNEPTSGAALFAGEDIFELKGKALDGFRRRVQMVFQDPFGSMNPRMNVRSIISEP 394
           R LL+L E   G   F G+ I +LKG AL   RR +Q++FQDP+ S++PR+ V   I EP
Sbjct: 381 RALLQLVESQKGEITFNGQRIHQLKGGALQPLRRDIQLIFQDPYASLDPRLTVGFSIMEP 440

Query: 395 WAIHRDILPRERWNERVVELLELVGLKAEHAARHPHQFSGGQRQRIAIARALASEPELIV 454
             +H +I  R+   +RV  LL  VGL+ EHA R+PH+FSGGQRQR+ IARALA  P++++
Sbjct: 441 LLVH-NICRRQEAEKRVEWLLSRVGLEPEHARRYPHEFSGGQRQRVCIARALALNPKVVI 499

Query: 455 CDEAVSALDVSIQMQVIELLADLRQRLGLSYVFITHDLPIVRQFADRILVMQRGRIVEEG 514
            DEAVSALDVSIQ Q+I L+ +L++  G++++FI+HD+ +V + + R+ VM  G+IVE G
Sbjct: 500 ADEAVSALDVSIQAQIINLMLELQREFGIAFLFISHDMAVVERISHRVAVMYMGQIVEIG 559

Query: 515 ETEALFVSPQHEYTQALLRAVP 536
             + +F  P+H YT+ L+ AVP
Sbjct: 560 SRQDVFERPRHPYTRKLMSAVP 581



 Score =  205 bits (521), Expect = 5e-57
 Identities = 123/279 (44%), Positives = 167/279 (59%), Gaps = 17/279 (6%)

Query: 3   APDKPILRIDKLTVDFLSEGD-------PVRAVDDVSFDVCPGETLVILGESGSGKSVST 55
           A  +P+LR+  L   F             V AV++VSFD+ PGETL ++GESG GKS ++
Sbjct: 321 AQSEPVLRVSNLVTRFPIRSGLLNRVTRQVHAVENVSFDLWPGETLSLVGESGCGKSTTS 380

Query: 56  GTVMGLIDCPPGDIVSGSLVFDGTDLSRLDDEGRRELNGRRIAMIFQDPLAYLNPVYTVG 115
             ++ L++   G+I      F+G  + +L     + L  R I +IFQDP A L+P  TVG
Sbjct: 381 RALLQLVESQKGEIT-----FNGQRIHQLKGGALQPLR-RDIQLIFQDPYASLDPRLTVG 434

Query: 116 RQIAEVFESHGEGEGGAVRDKVVRLLERVGI-PEADERIDYYPHQFSGGQRQRVMIAMAI 174
             I E    H          +V  LL RVG+ PE   R   YPH+FSGGQRQRV IA A+
Sbjct: 435 FSIMEPLLVHNICRRQEAEKRVEWLLSRVGLEPEHARR---YPHEFSGGQRQRVCIARAL 491

Query: 175 ALKPDILIADEPTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIVMN 234
           AL P ++IADE  +ALDVS+QAQI+ L+ +LQRE G+A + I+HD+ V   ++ R+ VM 
Sbjct: 492 ALNPKVVIADEAVSALDVSIQAQIINLMLELQREFGIAFLFISHDMAVVERISHRVAVMY 551

Query: 235 GGKVVESGKAEDVFTNPSHAYTRRLMSAVPHADAPKAPR 273
            G++VE G  +DVF  P H YTR+LMSAVP AD  +  R
Sbjct: 552 MGQIVEIGSRQDVFERPRHPYTRKLMSAVPVADPSRRQR 590



 Score =  177 bits (448), Expect = 1e-48
 Identities = 103/256 (40%), Positives = 155/256 (60%), Gaps = 16/256 (6%)

Query: 306 AVDDVSFTLRRGETVGIVGESGSGKSSIARMLLRLNEPTSGAALFAGEDIFELK-GKALD 364
           AV +++F++ RGET+ IVGESGSGKS  +  L+RL E  +G  +  G+ +F  + G+ LD
Sbjct: 44  AVRNLTFSVDRGETLAIVGESGSGKSVTSLALMRLVEH-AGGVIHQGDMLFRRRDGQVLD 102

Query: 365 --GFRRRVQ---------MVFQDPFGSMNPRMNVRSIISEPWAIHRDILPRERWNERVVE 413
             G R+R           M+FQ+P  S+NP   V   I+E   +H+  + R       + 
Sbjct: 103 LRGARQRAMRTLRGADLAMIFQEPMTSLNPVFPVGEQIAESIRLHQG-MDRRAARAETLR 161

Query: 414 LLELVGLKAEHAA--RHPHQFSGGQRQRIAIARALASEPELIVCDEAVSALDVSIQMQVI 471
           +L+LV +        R+PHQ SGG RQR+ IA AL+ +P L++ DE  +ALDV+IQ Q++
Sbjct: 162 MLDLVRIPEARNVLDRYPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQIL 221

Query: 472 ELLADLRQRLGLSYVFITHDLPIVRQFADRILVMQRGRIVEEGETEALFVSPQHEYTQAL 531
           +L+  L++ + ++ +FITHD+ +V + A+R+LVM RG  VE G    +F +PQH YTQ L
Sbjct: 222 QLIRVLQREMEMAVIFITHDMGVVAEMAERVLVMHRGESVEAGSVGQIFTAPQHPYTQGL 281

Query: 532 LRAVPQPKWLRSDPAP 547
           L AVP    +R  P P
Sbjct: 282 LAAVPALGSMRGQPFP 297