Pairwise Alignments

Query, 550 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  467 bits (1202), Expect = e-136
 Identities = 253/532 (47%), Positives = 340/532 (63%), Gaps = 5/532 (0%)

Query: 5   DKPILRIDKLTVDFLSEGDPVRAVDDVSFDVCPGETLVILGESGSGKSVSTGTVMGLIDC 64
           D  I+    + V F  E   V AV D+SF +  GET+ I+GESGSGKSV+  T+MGL+  
Sbjct: 22  DNAIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTK 81

Query: 65  PPGDIVSGSLVFDGTDLSRLDDEGRRELNGRRIAMIFQDPLAYLNPVYTVGRQIAEVFES 124
                 S ++ F+G D+ R     RR L G RI+MIFQ+P++ LNP+YT+G QI E    
Sbjct: 82  RASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRV 141

Query: 125 HGEGEGGAVRDKVVRLLERVGIPEADERIDYYPHQFSGGQRQRVMIAMAIALKPDILIAD 184
           H          + + LL +V IPE + R+  YPHQ SGGQRQRVMIAMA++  PD+LIAD
Sbjct: 142 HSRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIAD 201

Query: 185 EPTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIVMNGGKVVESGKA 244
           EPTTALDV+VQAQIL L+RDLQ++ GMA+++ITHDL +    +D + VM  G++ E    
Sbjct: 202 EPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTT 261

Query: 245 EDVFTNPSHAYTRRLMSAVPHADAPKAPRNAAQGEVLLQVAHLSKHYKLG-SGPFSPK-R 302
           E +F  P H YT+RL+++ P   A   P N+    VLL  + +   + +   G F P+ +
Sbjct: 262 ERLFAAPQHPYTKRLLASEPRGTAKPLPENSG---VLLTASGVRVSFMMRYGGLFKPELK 318

Query: 303 EFRAVDDVSFTLRRGETVGIVGESGSGKSSIARMLLRLNEPTSGAALFAGEDIFELKGKA 362
           E  AVD +  TL+R ET+G+VGESGSGK++  + LLRLNEP  G  +F GE +       
Sbjct: 319 ELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVGGEVIFDGERVDGRSRSE 378

Query: 363 LDGFRRRVQMVFQDPFGSMNPRMNVRSIISEPWAIHRDILPRERWNERVVELLELVGLKA 422
           +   R R+Q+VFQDPF S+NPRM +  II E   I+     +    ERV + LE  G+  
Sbjct: 379 MRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLERVRDALEAAGMPG 438

Query: 423 EHAARHPHQFSGGQRQRIAIARALASEPELIVCDEAVSALDVSIQMQVIELLADLRQRLG 482
              +R PH+FSGGQRQRIAIARA+A EPE I+ DE  SALD+S+Q Q+I+LL  L+   G
Sbjct: 439 NILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQDERG 498

Query: 483 LSYVFITHDLPIVRQFADRILVMQRGRIVEEGETEALFVSPQHEYTQALLRA 534
           LSY+FI+HDL +VR    R++VMQ GRIVEEG  E +  +P+ EYTQ L+RA
Sbjct: 499 LSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVRA 550



 Score =  190 bits (482), Expect = 1e-52
 Identities = 108/281 (38%), Positives = 164/281 (58%), Gaps = 15/281 (5%)

Query: 265 HADAPKAPRNAAQGEVLLQVAHLSKHYKLGSGPFSPKREFRAVDDVSFTLRRGETVGIVG 324
           +A A +   +  Q   ++   +++  +K+  G         AV D+SF L RGET+ IVG
Sbjct: 9   YAPAIRFDADDRQDNAIIDARNIAVTFKVEHGTVE------AVKDISFQLYRGETIAIVG 62

Query: 325 ESGSGKSSIARMLL-----RLNEPTSGAALFAGEDIFELKGKALDGFR-RRVQMVFQDPF 378
           ESGSGKS  AR ++     R +   S    F G+DI     +     R  R+ M+FQ+P 
Sbjct: 63  ESGSGKSVTARTIMGLLTKRASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPM 122

Query: 379 GSMNPRMNVRSIISEPWAIHRDILPRERWNERVVELLELVGLKAEHAA--RHPHQFSGGQ 436
            S+NP   + S I E   +H   L R+    R ++LL  V +    A   ++PHQ SGGQ
Sbjct: 123 SSLNPIYTIGSQIVEAIRVHSR-LSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQ 181

Query: 437 RQRIAIARALASEPELIVCDEAVSALDVSIQMQVIELLADLRQRLGLSYVFITHDLPIVR 496
           RQR+ IA AL+++P++++ DE  +ALDV++Q Q++ L+ DL+++ G++ V ITHDL IV+
Sbjct: 182 RQRVMIAMALSNDPDVLIADEPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVK 241

Query: 497 QFADRILVMQRGRIVEEGETEALFVSPQHEYTQALLRAVPQ 537
           QF+D + VMQ G + E   TE LF +PQH YT+ LL + P+
Sbjct: 242 QFSDYVYVMQHGEMREHNTTERLFAAPQHPYTKRLLASEPR 282