Pairwise Alignments

Query, 313 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 321 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  132 bits (333), Expect = 8e-36
 Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 10/304 (3%)

Query: 12  WITLTVLVAIVGMAD---PGFLKPQNLMSLAGDIVPLFIMALGLTFAIYIGGIDLSAQSM 68
           W+ L   ++I  ++      FL P N+  L   I  + I A  + F +  G  DLS  S+
Sbjct: 23  WVMLLAALSIFVLSALFIDNFLSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSV 82

Query: 69  ANMVTVIASVYLASMGAWV--ALLCVAAGFLLGTLSGYITTRLYVPSFISTLAVGGVAFS 126
                V+A + +    + V      +A G ++G ++G +  +L + + I+TLA   +   
Sbjct: 83  IACAGVVAGIVIRDTDSVVLGVSAALAMGLVVGLINGIVIAKLRINALIATLATMQIVRG 142

Query: 127 VAQWLSGQRALNMDAAQRNETFGWMIGRTWGVPNELLIAAVLLLVCLFIERRTILGRALK 186
           +A   S  +A+ +        F +  G+  GVP  ++I  +  +   ++   T  GR   
Sbjct: 143 LAYIFSNGKAVGV---MDEGFFVFGNGQLLGVPVPIIITVLCFVFFGWLLNYTTYGRNTM 199

Query: 187 AVGAGELAAAASGLNVARYKILAFAISGALAAIAGLLFAVKLSGGAPTIANGFLLPAIVA 246
           A+G  + AA  +G+NV R KI+ FA+ G + A+AG++ A +++ G P I  GF L  I A
Sbjct: 200 AIGGNQEAALLAGVNVDRTKIIIFAVHGLIGALAGVILASRMTSGQPMIGQGFELTVISA 259

Query: 247 VLVGGTPLTGGVGGVLNTVIGTLIVAVIRASMLYFEIDATQQQMVFGIVLIGAIALTIDR 306
            ++GG  L+GG+G + + + G LI+A+I  +M    ID   Q ++ G +L+  +A+ IDR
Sbjct: 260 CVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILL--LAVIIDR 317

Query: 307 AKLR 310
            K R
Sbjct: 318 MKQR 321