Pairwise Alignments

Query, 313 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 325 a.a., D-ribose ABC transporter, permease component RbsC (from data) from Pseudomonas simiae WCS417

 Score =  154 bits (390), Expect = 2e-42
 Identities = 95/298 (31%), Positives = 154/298 (51%), Gaps = 9/298 (3%)

Query: 15  LTVLVAIVGMADPGFLKPQNLMSLAGDIVPLFIMALGLTFAIYIGGIDLSAQSMANMVTV 74
           L  ++A+  +    FL      +LA  I  L ++A+G+TF + IGGIDLS  S+  +   
Sbjct: 27  LLAMIALFSVLSDHFLSYDTFSTLANQIPDLMVLAVGMTFILIIGGIDLSVGSVLALAAS 86

Query: 75  IASVYLASMGAWV---ALLCVAAGFLLGTLSGYITTRLYVPSFISTLAVGGVAFSVAQWL 131
             SV +   G  V   A+L +    L GT++G IT    +PSFI +L V  +A  VA  +
Sbjct: 87  AVSVAILGWGWSVLPAAVLGMGCAALAGTITGSITVAWRIPSFIVSLGVLEMARGVAYQM 146

Query: 132 SGQRALNMDAAQRNETFGWMIGR-TWGVPNELLIAAVLLLVCLFIERRTILGRALKAVGA 190
           +G R      A   ++F W+     +G+    +IA ++++    +  RT+ GR L  +G 
Sbjct: 147 TGSRT-----AYIGDSFAWLSNPIAFGISPSFIIALLVIIAAQLVLTRTVFGRYLIGIGT 201

Query: 191 GELAAAASGLNVARYKILAFAISGALAAIAGLLFAVKLSGGAPTIANGFLLPAIVAVLVG 250
            E A   +G+N   YKIL F++ G LA +A L    +L    P   +G  L  I AV++G
Sbjct: 202 NEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQISRLEAADPNAGSGLELQVIAAVVIG 261

Query: 251 GTPLTGGVGGVLNTVIGTLIVAVIRASMLYFEIDATQQQMVFGIVLIGAIALTIDRAK 308
           GT L GG G V++T  G LI++V+ A +         ++++ G V++ A+ L   R++
Sbjct: 262 GTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDTYRSQ 319