Pairwise Alignments

Query, 313 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 322 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  137 bits (345), Expect = 3e-37
 Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 12  WITLTVLVAIV---GMADPGFLKPQNLMSLAGDIVPLFIMALGLTFAIYIGGIDLSAQSM 68
           W  L   V+I     +    FL P N+  L   I  + I A  + F +  G  DLS  S+
Sbjct: 24  WAMLLAAVSIFLLCALLIDNFLSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSV 83

Query: 69  ANMVTVIASVYLAS-----MGAWVALLCVAAGFLLGTLSGYITTRLYVPSFISTLAVGGV 123
                V+A++ +       +G   ALL    G ++G ++G +  +L V + I+TLA   +
Sbjct: 84  IACAGVVAAIVMRDTDSVMLGIGAALLM---GLMVGLINGIVIAKLRVNALITTLATMQI 140

Query: 124 AFSVAQWLSGQRALNMDAAQRNETFGWMIGRTWGVPNELLIAAVLLLVCLFIERRTILGR 183
              +A   +  +A+ +    +++ F +  G+  GVP  +LI  +  L   ++   T  GR
Sbjct: 141 VRGLAYIFANGKAVGVS---QDQFFVFGNGQLMGVPVPILITILCFLFFGWLLNYTTYGR 197

Query: 184 ALKAVGAGELAAAASGLNVARYKILAFAISGALAAIAGLLFAVKLSGGAPTIANGFLLPA 243
              A+G    AA  +G+NV R KIL FA+ G + A+AG++ A +++ G P I  GF L  
Sbjct: 198 NTMAIGGNPEAALLAGVNVDRTKILIFAVHGVIGALAGVILASRMTSGQPMIGQGFELTV 257

Query: 244 IVAVLVGGTPLTGGVGGVLNTVIGTLIVAVIRASMLYFEIDATQQQMVFGIVLIGAIALT 303
           I A ++GG  L+GGVG + + + G LI+A+I  +M    ID   Q ++ G +L+  +A+ 
Sbjct: 258 ISACVLGGVSLSGGVGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILL--LAVV 315

Query: 304 IDRAKLR 310
           IDR K R
Sbjct: 316 IDRMKQR 322