Pairwise Alignments

Query, 313 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 329 a.a., Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score =  143 bits (361), Expect = 5e-39
 Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 13  ITLTVLVAIVGMADPGFLKPQNLMSLAGDIVPLFIMALGLTFAIYIGGIDLSAQSMANMV 72
           + L  ++A+ G     FL  +  +S+A +I  L +MA+G+TF + I GIDLS  S+   +
Sbjct: 28  VVLVGMIALFGSLSEYFLTRETFVSIANEIPALAVMAVGMTFVLIIAGIDLSVGSV---L 84

Query: 73  TVIASVYLASMGAW------VALLCVAAGFLLGTLSGYITTRLYVPSFISTLAVGGVAFS 126
            + A+V  A++  W       A+L +A G + GT++G ++    +PSFI +L +      
Sbjct: 85  ALSAAVTAAAILEWKLSVPLAAVLGLATGLICGTVTGAVSVAWRLPSFIVSLGMLEAVRG 144

Query: 127 VAQWLSGQRALNMDAAQRNETFGWMIGRTWGVPNELLIAAVLLLVCLFIERRTILGRALK 186
            A  ++  R   +  A       W+     G+    ++A VL+++   +  RT+ GR + 
Sbjct: 145 GAYLVTDSRTQYVGDAISGLAAPWI----GGISAAFVLAVVLVVIGQMVLTRTVFGRHVV 200

Query: 187 AVGAGELAAAASGLNVARYKILAFAISGALAAIAGLLFAVKLSGGAPTIANGFLLPAIVA 246
            +G  E A   +G++    +I+ FA++G LA +AGL+ + +L    P    G  L  I A
Sbjct: 201 GIGTNEEAMRLAGVDPRPVRIIVFAVTGLLAGLAGLMQSARLEAADPNAGVGIELQVIAA 260

Query: 247 VLVGGTPLTGGVGGVLNTVIGTLIVAVIRASMLYFEIDATQQQMVFGIVLIGAIALTIDR 306
           V++GGT L GG G V+NT  G LI+AV+ A +         ++++ G V++  +A+ ID 
Sbjct: 261 VVIGGTSLMGGRGSVVNTFFGVLIIAVLEAGLAQVGASEPSKRIITGAVIV--VAVIIDT 318

Query: 307 AKLR 310
            + R
Sbjct: 319 LRQR 322