Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 271 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  201 bits (512), Expect = 1e-56
 Identities = 112/263 (42%), Positives = 157/263 (59%), Gaps = 6/263 (2%)

Query: 33  IGLALILLIVFLALFAPLIAPYDPAAQSIMARLKPPVWMERGTWEHLLGTDNLGRDVLSR 92
           IG  LI +++ LA+ A +  PY+P A  + ++L+PP      +  H LGTD  GRDV SR
Sbjct: 10  IGGVLIAVLLVLAVVAAVWTPYNPLAIDLRSKLQPP------SMAHWLGTDEFGRDVASR 63

Query: 93  IIWGARATLTIGAVTCLLAATLGTVIGLWAGFMGGRTDSILMRLVDIQVSFPGILLILLV 152
            + GA  +  +  +T  LA  +G V+G+ AGF+ G TD +LM   D  ++FPG+LL L V
Sbjct: 64  AMQGAATSCLVALLTVTLATAIGLVVGVVAGFVRGWTDRVLMAFNDTLLAFPGLLLALGV 123

Query: 153 VAVLGPGVWTLVAVLSVTNWMVYARLVRGIVSSTRQTPYVEAAEVIGCRPARVIFRHILP 212
           + ++G   W +V  LS+       R+VRG V S R+  YVEA+ +IG      ++RHILP
Sbjct: 124 MVIVGANKWGIVLALSMAYAPSVVRVVRGTVLSLREREYVEASRMIGNSELYTMWRHILP 183

Query: 213 NIVSPLMTLAILEFTNIVLAEAAVSFLGFGVQPPATSWGLDVASGRDYLFIAWWLVTFPG 272
           N V+P+  LA   F  ++L+E+A+SFLG GV PPA +WG  +AS R Y+  A WL   PG
Sbjct: 184 NCVAPVAVLATSMFGWVLLSESALSFLGLGVPPPAPTWGNMLASARPYMASAVWLCVVPG 243

Query: 273 LAIVATVLSINLFANWLRVTTDP 295
           L I  T+L INL    LR   DP
Sbjct: 244 LCIALTLLGINLLGESLRDRLDP 266