Pairwise Alignments

Query, 306 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  192 bits (488), Expect = 9e-54
 Identities = 117/333 (35%), Positives = 177/333 (53%), Gaps = 31/333 (9%)

Query: 1   MLEFILRRLFQGVLVVFGVTATVFVVTRLV-GDPVALMLPLSATEAQRAAFA-QQIGLDQ 58
           M  FI RRL   +   FG+T   F + R++ GDPV +M+     + +  A A +++GL++
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PIATQFLRFVGDIATLDFGNSLWQRRPAIEVVFERLPNTLLLIAAGLGAAVMLSIPLGAV 118
           P+  Q+L +VG +A  D G SL  R           P TL L  A L  A +L +  G +
Sbjct: 61  PLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVI 120

Query: 119 SALRPGGLVDRLTMSVGLLGLAMPQFWLGLVAIMIFAVTLRWLPTSGM------------ 166
           +AL+ G L D   M + L G +MP FW GL+ IM F+V+L W P SG             
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTG 180

Query: 167 ----------------GTAAHLVLPALTLALTPLARFTMMVRASMIDELNKPYVKTARAK 210
                               HL+LPA+ L   PLA    M R+SM++ L + Y++TA+AK
Sbjct: 181 FMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAK 240

Query: 211 GLGLTRILRVHTLRNILVPFLSISGWELIATLSGYTVVVETVFAWPGLGLTAVQAIQRGD 270
           GL   R++ VH LRN L+P L++ G + + TL    V+ ET+F+WPG+G   ++AI   D
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVVGLQ-VGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 271 LFLMQAIVFVIAFLIVLIGIALDILSKAVDPRM 303
             ++Q  + +IA L++L+   +DIL    +PR+
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRI 332