Pairwise Alignments

Query, 306 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  204 bits (519), Expect = 2e-57
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 11/304 (3%)

Query: 12  GVLVVFGVTAT-VFVVTRLV-GDPVALMLPLSATEAQRAAFAQQIGLDQPIATQFLRFVG 69
           G+LVV  + A  VFV+TR   GDPV+++L   AT A  A   ++ GLD+P+  QF  ++ 
Sbjct: 15  GMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKPLPVQFGYWLR 74

Query: 70  DIATLDFGNSLWQRRPAIEVVFERLPNTLLLIAAGLGAAVMLSIPLGAVSALRPGGLVDR 129
           ++   + G S++ +RP  + ++ER   T LL    +  A ++ +P G VSA+  G +VD+
Sbjct: 75  EVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGIVSAVFRGRVVDQ 134

Query: 130 LTMSVGLLGLAMPQFWLGLVAIMIFAVTLRWLPTSGMGT--------AAHLVLPALTLAL 181
           L   + +LG ++P FWLG+V I IFAV+  W P SG G            LVLPA  L L
Sbjct: 135 LFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAERLHSLVLPATVLGL 194

Query: 182 TPLARFTMMVRASMIDELNKPYVKTARAKGLGLTRILRVHTLRNILVPFLSISGWELIAT 241
              A      RASM+D L + YV+TAR+KGL  + ++  H LRN LVP +++ G   +A 
Sbjct: 195 LNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNALVPIVTVIGL-TVAL 253

Query: 242 LSGYTVVVETVFAWPGLGLTAVQAIQRGDLFLMQAIVFVIAFLIVLIGIALDILSKAVDP 301
           + G  V+ ETVF  PG+G   V A+ R D  ++Q  + VIA + VLI  ++D+L   VDP
Sbjct: 254 MIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSIDLLYAVVDP 313

Query: 302 RMEL 305
           R+++
Sbjct: 314 RVKV 317