Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 296 a.a., Inner membrane ABC transporter permease protein YcjP from Xanthobacter sp. DMC5

 Score =  122 bits (307), Expect = 8e-33
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 46/305 (15%)

Query: 20  VLVITLLFLAPIYWITSTAFKPRNLAT---TIPPTVIFEPEISPFVKLFTKRSQLRSAPE 76
           +LV   + L P YW+  TA KP    T      P  + +P +     L  + S       
Sbjct: 33  LLVFVFVLLFPFYWMAITAVKPNFQLTDYNNYSPLWVVQPTLDHIKYLLFETS------- 85

Query: 77  PEDYAAAPWWERLVFDGGEKVVRSGRGQVQLSGYPNRFMNSLIVAITSTVLAVAMGTFTA 136
                                            YP+   N++ +++ +TV+++    F A
Sbjct: 86  ---------------------------------YPHWLWNTVYISVAATVISLVTSVFAA 112

Query: 137 YGFSRFKVKGEADLLFFILSTRMLPPVVVAIPMFLMYRAVGLNDTHWGLIILYTAFNLSF 196
           Y   R +  G   +   I    ++PP ++ IP+ +M   +G+ DT   LI+ Y  F + F
Sbjct: 113 YAIERLRFNGSRWVGLGIFLAYLVPPSILFIPLAIMVFGLGIYDTKLALILTYPTFLVPF 172

Query: 197 SVWLMKGFIDEIPKEYEEAALVDGYTRLEAFFKIVLPEAATGIAATAVFCFITAWNEYAF 256
           S WL+ G+   IP E EE ALVDG +R +   K++LP +  G+ +  +F F  +WNE+ +
Sbjct: 173 STWLLMGYFRSIPFELEECALVDGASRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIY 232

Query: 257 AL-IMTNRRAQTAPPFIPSQ-VGSGLPDWTVIAAGTFLFLLPVAIFTFLLRNHLLRGMSF 314
           AL  + +   +T P  + ++ V S + +W  + AG  +  LPV I      ++ +  M+ 
Sbjct: 233 ALTFIQSSENKTVPVGVLTELVRSDVYEWGSLMAGALIGSLPVVILYSFFVDYYVSSMT- 291

Query: 315 GAIRK 319
           GA+++
Sbjct: 292 GAVKE 296