Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 276 a.a., ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) from Pseudomonas simiae WCS417

 Score =  142 bits (358), Expect = 9e-39
 Identities = 90/318 (28%), Positives = 155/318 (48%), Gaps = 42/318 (13%)

Query: 1   MAAVQTRSERALNRVAIAAVLVITLLFLAPIYWITSTAFKPRNLATTIPPTVIFEPEISP 60
           M   Q+R  ++L    +A  + I + F  PI+W+  T+FK    A   PP  IF P +  
Sbjct: 1   MTLQQSRRLQSLLLGTLAWAIAILIFF--PIFWMVLTSFKTEIDAFATPPQFIFTPTLEN 58

Query: 61  FVKLFTKRSQLRSAPEPEDYAAAPWWERLVFDGGEKVVRSGRGQVQLSGYPNRFMNSLIV 120
           ++ +           E  +Y +  W                              NS+++
Sbjct: 59  YLHI----------NERSNYFSYAW------------------------------NSVLI 78

Query: 121 AITSTVLAVAMGTFTAYGFSRFKVKGEADLLFFILSTRMLPPVVVAIPMFLMYRAVGLND 180
           + ++T L + +    AY  + ++ +     L ++LST+MLPPV V +P++L+ ++ GL D
Sbjct: 79  SFSATALCLLISVPAAYSMAFYETQRTKGTLLWMLSTKMLPPVGVLMPIYLLAKSFGLLD 138

Query: 181 THWGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRLEAFFKIVLPEAATGIA 240
           T   LII+YT  NL   VW++  +  +IPK+  EAA +DG T  +   +++LP A  G+A
Sbjct: 139 TRIALIIIYTLINLPIVVWMVYTYFKDIPKDILEAARLDGATLWQEMVRVLLPIAKGGLA 198

Query: 241 ATAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIF 300
           +T +   I  WNE  ++L +T+  A      I S        W  ++A + L   P+ IF
Sbjct: 199 STVLLSLILCWNEAFWSLNLTSSSAAPLTALIASYSSPEGLFWAKLSAVSTLACAPILIF 258

Query: 301 TFLLRNHLLRGMSFGAIR 318
            ++ +  L+RG+SFGA++
Sbjct: 259 GWISQKQLVRGLSFGAVK 276