Pairwise Alignments

Query, 301 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 302 a.a., glucose/xylose ABC transporter, permease component 2 (from data) from Pseudomonas simiae WCS417

 Score =  112 bits (281), Expect = 8e-30
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 16/300 (5%)

Query: 1   MATVVMTSLDSKSRAASRGLSDIKIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRAST 60
           M++V + S  S   A  R L       L + P++  ++V     ++++   SFT+   ST
Sbjct: 1   MSSVAVFSKASPFDALQRWLP-----KLVLAPSMFIVLVGFYGYILWTFVLSFTN---ST 52

Query: 61  NAPA-TFVGLQNYRELLNDPFIWANFAITAKYVIVSVTGQVVVGFGTAMLLNREIPFKGL 119
             P   + GL  Y  L ++   W      A +  + +   +V+G   A+ L+++I  +G 
Sbjct: 53  FLPTYKWAGLAQYARLFDNDRWWVASKNLAVFGGMFIGITLVIGVTLAIFLDQKIRREGF 112

Query: 120 ITTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLG----SFEWLANPEMALYAVAIT 175
           I T+ L PM LSM V G  WK L +P  G+       G      +WL +P+  +Y + I 
Sbjct: 113 IRTIYLYPMALSMIVTGTAWKWLLNPGMGLDKLLRDWGWEGFRLDWLIDPDRVVYCLVIA 172

Query: 176 DIWMWSPFVMLLSLAGLSAVPRHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTM 235
            +W  S F+M + LAGL  V + +  AA ID A     ++ + LP + P+   A++    
Sbjct: 173 AVWQASGFIMAMFLAGLRGVDQSIVRAAQIDGASMPRIYWSVVLPSLRPVFFSAVMILAH 232

Query: 236 EAFKTFDLAYILTSQP---TTEVISIRLYKMAFQEWQTGRSCALAYIVLIMVLAITNIYV 292
            A K+FDL   +T+     ++++ ++ +Y   F   Q G   A A ++L  +LAI   Y+
Sbjct: 233 IAIKSFDLVAAMTAGGPGYSSDLPAMFMYSFTFSRGQMGMGSASAILMLGAILAIIVPYL 292