Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

 Score =  323 bits (828), Expect = 5e-92
 Identities = 293/1078 (27%), Positives = 483/1078 (44%), Gaps = 87/1078 (8%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62
            +  L V + +S L  A S  +L   A+     A+ + D  +L G +   E    +G++ +
Sbjct: 7    FIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSGIQPI 66

Query: 63   VGCRLDL--------QDGMS-----ILVYPTDRAAYSRLTRLLT---LGKGRGGKANCII 106
             G  L L        + G+      +++   D A +  L RL++   L      +   + 
Sbjct: 67   PGVSLALDLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDEPRILP 126

Query: 107  HF-----DDVALYAEGLIGILVPDLAD---EVCAVQLRKIAEVFGDRAYVSLCLRRRPND 158
             +     D +     G  G L   +     E+ A +L  +  +FGDR YV +       +
Sbjct: 127  EWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRHGADPE 186

Query: 159  QLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADR 218
            +L    L +LA    V  +  N+  F      +  D +  I  G  + + G  R   A+ 
Sbjct: 187  RLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSE-GDRRRLTAEH 245

Query: 219  YLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP---------EEALILGMTA 269
              K   EM  LF   PEA A T+EI +RC + +  +    P         E +  L   A
Sbjct: 246  RFKTRAEMLELFADLPEATANTVEIAKRCAYRVRTVKPILPRFTTADEKAEGSDPLEAEA 305

Query: 270  QQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIVRYA 323
             + L+    EG+ AR  +  P            + +E+++I  MK+  YFL V   +++A
Sbjct: 306  AE-LKRQAEEGLAARLAKHGPAPGLDEAAYHDRLAYEVSVITKMKFPGYFLIVSDFIKWA 364

Query: 324  RSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERR 382
            ++  I +  GRGS A S V Y L IT +DP    LLFERF++ +R   PD DVDF  ERR
Sbjct: 365  KAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQERR 424

Query: 383  EEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWS------ 436
            +EVI+++ + YG  + A   T    +A+G +RDVG+ L++P   +  L   +        
Sbjct: 425  DEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPANPV 484

Query: 437  WSETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIE 496
              +   E + R       +  +     +A +L G  R+ S H  G V+   +L +LVP+ 
Sbjct: 485  TLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIGDRQLHELVPLY 544

Query: 497  PATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556
                +D  V +++   +E    +K D L L  LT + KA  L+ +   E +D++ IP +D
Sbjct: 545  RDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQRGIE-LDISKIPLDD 603

Query: 557  PATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616
              TY M+ K +T+G FQ+ES      L  MK     D+V  VA+ RPGP+    +  Y  
Sbjct: 604  AKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALYRPGPMAN--IPVYCD 661

Query: 617  RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFT 676
             + G+   +Y  P LE  L +T GV ++QE  M++A   AG++ GEAD LR++M   K  
Sbjct: 662  CKHGRATPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGK-KIR 720

Query: 677  GGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCY 736
              + + +++ V+G    G  K  A+  F  L  F  YGF +SHAA++AL+AY + ++K  
Sbjct: 721  AEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWLKAN 780

Query: 737  FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796
            +P  F AA +          A+  ++A+  G+EV P  IN S  +  ++  DG     + 
Sbjct: 781  YPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFGVK--DGK----II 834

Query: 797  LGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVPVAS--LVELAEADAFLPSLSL 854
              M  ++G+  A    +VAAR D PF S  D   R  V + +   +E   A      L  
Sbjct: 835  YAMAAIKGVGEAAVEALVAARGDRPFRSFADFATRLPVKLVNKRTLESLMAAGCFDVLEK 894

Query: 855  ERRDALWAIKALRDEPLPLFTAAADREARAIAEQEE------------PEVELRQMTDGQ 902
             R  A  AI+       P+   A   EA A + Q +            P  E       +
Sbjct: 895  NRARAFAAIE-------PIVAEAQRVEANAQSGQNDMFGSGPAAAASLPIPEASPWLPSE 947

Query: 903  NVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCA---QAMTAHDGQWLMAAGLVLVRQR- 958
             + ++Y   G  L  HPL    + L K R+ + A   +A+ +      +AA +V  ++R 
Sbjct: 948  RLQKEYDSIGFFLTGHPLDDYAEALKKMRVQSFADFSRAVRSGAAAGRLAATVVSKQERR 1007

Query: 959  --PGSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQREGEVVHL 1014
               G+  G+  + + D +G    V++ +     R ++   + + +    +  GE V +
Sbjct: 1008 TKSGTRMGI--VGLSDPSGHYEAVIFSEGLAHYRDLLEPGTPLLMMVAAEMNGEDVRV 1063