Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score =  375 bits (963), Expect = e-107
 Identities = 291/1081 (26%), Positives = 501/1081 (46%), Gaps = 89/1081 (8%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62
            +  L++ T +S +      + L  T   M + A+ V D+N++  +V+  + +   G++ +
Sbjct: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64

Query: 63   VGCRLDLQDG------MSILVYPTDRAAYSRLTRLLTLGKGRGGK-ANCIIHFDDVALYA 115
             G  L L +         I +   +   Y  LT L++ G   G +  + II  + VA  +
Sbjct: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124

Query: 116  EGLI----------GILVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQLQLHEL 165
            EGLI          GI +     +   V  ++  +VF DR Y+ +    RPND+  LH  
Sbjct: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184

Query: 166  TNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPPEE 225
              LA K     + TNDV F +    +  +   CI  G  +DD    +    ++YLK  EE
Sbjct: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244

Query: 226  MARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRARY 285
            MA LF   PEAL  ++EI +RC   ++   +  P   +  GMT  +  +  +++G+  R 
Sbjct: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304

Query: 286  PEGLPTHVEK-----------TIRHELALIETMKYAPYFLTVFSIVRYARSQGI-LCQGR 333
               LP    +            +  EL +I  M +  YFL V   +++A++ G+ +  GR
Sbjct: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364

Query: 334  GSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTY 393
            GS A S V YV  IT +DP   DLLFERF++ ER   PD DVDF  + R+ VI+++ + Y
Sbjct: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424

Query: 394  GHDKAALCSTVTRYRAKGAIRDV----GKALDLPEDLIRTLSSGIWSWSETVGERQVREL 449
            G +  +   T     AK  IRDV    GK+  L + L + +   +    E   E++    
Sbjct: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484

Query: 450  GLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIEPATMADRQVIEWD 509
                 D        +A++L G  RN+ +H GG V+   +L D  PI         V ++D
Sbjct: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544

Query: 510  KDDIEALKFLKVDVLALGMLTCMAKAFALISEHK----HEDIDLATIPQEDPATYAMIRK 565
            KDD+EA   +K D L L  LT +  A   I+  +     E +D+A IP +D  TY +++K
Sbjct: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604

Query: 566  ADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEKVE 625
            A+T   FQ+ESR    ++ ++KP    DL+  VA+ RPGP+Q  MV  ++ R+ G+ ++ 
Sbjct: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664

Query: 626  YPTPE-----LEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVS 680
            YP  +     L+ VL  T G+ L+QE  M++A V AG+T G AD LR++M   K    ++
Sbjct: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEMA 723

Query: 681  RFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCYFPDV 740
            + +   + G   N    + A   F  +E F  YGF +SH+A++ L++Y + ++K ++P  
Sbjct: 724  KQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAP 783

Query: 741  FCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVRLGMR 800
            F AA+L++          ++ + R   + +    +N S +      ++  G   +  G+ 
Sbjct: 784  FMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKF---TVNDEG--RIIYGLG 838

Query: 801  LVRGLATADAARIVAARADEPFTSVDDMWRRSGVPVASLVELAEADAFLPSLSLER---- 856
             ++G+       I  AR D PF  + D   R  +     +     D  + S +L+R    
Sbjct: 839  AIKGVGEGPVEAITEARQDGPFKDLFDFCARVDL---KRINKRTLDGLIRSGALDRLGPY 895

Query: 857  -RDALWAIKALRDEPLPLFTAAADREARAIAE------------------QEEPEV---- 893
              D   A +A  D    +   A +   +A  +                  +E+ +V    
Sbjct: 896  FHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNH 955

Query: 894  -ELRQMTDGQNVVEDYSHTGLTLREHPLRFMRDDL---AKRRIVTCAQAMTAHDGQWL-- 947
             + +++T  + +  +    GL L  HP+     ++   A++RI+       A D Q +  
Sbjct: 956  RKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRII---DLKPARDTQTVAG 1012

Query: 948  MAAGLVLVRQRPGSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQR 1007
            M   L +++ + G   G  FIT++D +G     ++   F  ++ ++   +M+ + G +  
Sbjct: 1013 MIIALRVMKNKKGDKMG--FITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSN 1070

Query: 1008 E 1008
            +
Sbjct: 1071 D 1071