Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  323 bits (827), Expect = 6e-92
 Identities = 281/1096 (25%), Positives = 486/1096 (44%), Gaps = 91/1096 (8%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62
            +  L++ T FS +   +  +E    A      AL + D N+L G V+  +  R  G++ V
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 63   VGCRLDLQDGMS--------ILVYPTDRAAYSRLTRLL----TLGKGRG-GKANCIIHFD 109
            +G  + + DG+         I++       Y  L+ LL    T    RG  +A C + + 
Sbjct: 62   IGAEIFI-DGLGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEW- 119

Query: 110  DVALYAEGLIGI-----------LVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPND 158
             V   + GLI +           L+    +    + L+ +A +F  R Y+ L    RP D
Sbjct: 120  -VQELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQ-LAGIFPHRFYIELQRAGRPED 177

Query: 159  QLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADR 218
            +  +     LA + ++  + T+ V F      +  +   CI  G  + +    R    ++
Sbjct: 178  EPHVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQ 237

Query: 219  YLKPPEEMARLFPAYPEALARTMEIVERCRFSL---EELVYQYPEEALILG--MTAQQSL 273
            Y K   EM  LF   P ALA T+EI +RC  +L   +  +  +P   +  G  M      
Sbjct: 238  YFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFF 297

Query: 274  QHYTWEGVRAR----YPEGLPTHVEKT-----IRHELALIETMKYAPYFLTVFSIVRYAR 324
            +  ++EG+  R    YP+      ++      +  E+  I  M +  YFL V   +++A+
Sbjct: 298  RQESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAK 357

Query: 325  SQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERRE 383
              G  +  GRGS A S V Y L IT +DP    LLFERF++ ER   PD D+DF    R+
Sbjct: 358  ENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRD 417

Query: 384  EVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPE---DLIRTLSSGIWSWSET 440
             VI ++   YG +  +  +T     A+ AIRDVG+ LD+     D I  L       S T
Sbjct: 418  RVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVT 477

Query: 441  V---------GERQVRELGLNPD-------DRRLTLTLRLAQQLMGAPRNLSQHPGGFVL 484
            +         G++    + + P        +  + + + LAQ+L G  RN+  H GG ++
Sbjct: 478  LQYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLI 537

Query: 485  THDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCM--AKAFALISEH 542
               +L D  P+     ++  V ++DKDD+EA+  +K D L L  LT +  A+ F +    
Sbjct: 538  APGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK 597

Query: 543  KHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVR 602
              E+     IP  D ATY +  +  T   FQ ESR    ML   +P    DL+   A+ R
Sbjct: 598  GQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657

Query: 603  PGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGE 662
            PGP+  D++  ++ R+ G+E+VEYP P +  +L +T G+ ++QE  M+ A +  G++ G 
Sbjct: 658  PGPM--DLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGG 715

Query: 663  ADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAAS 722
            AD LR++M   K        +      +  +G  ++ A++ F  +E F  YGF +SHAA+
Sbjct: 716  ADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAAA 775

Query: 723  FALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREH-GVEVRPICINRSRWD 781
            ++L+AY + ++K ++   F  A +  +         +  DA+++ G+   P  +NR  + 
Sbjct: 776  YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNY- 834

Query: 782  CMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAARAD-EPFTSVDDMW---RRSGVPVA 837
               EP+       +R G+  V+G        +V AR +  PF S+ D      R  +   
Sbjct: 835  -RFEPVT---DRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKR 890

Query: 838  SLVELAEADAFLPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQE------EP 891
            ++  L +A AF    ++++  A       R     + TAA   +     + E      EP
Sbjct: 891  TVEALIKAGAF---DAIQQNRASLIASVDRAFEFAIATAANASQVDIFGDCEHGSATAEP 947

Query: 892  E-VELRQMTDGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAA 950
            + V+       + +  + +  G  L  H    +  ++ +         + + D Q  + A
Sbjct: 948  DLVDATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIA 1005

Query: 951  GLVL-VRQRPGSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQ--R 1007
            G+V   R   G    +    ++D++   +      L   +R  +    ++ ++GR+Q  R
Sbjct: 1006 GIVSDFRVINGQRGRLAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPAR 1065

Query: 1008 EGEVVHLVAQQLFDLS 1023
             G       QQ++DL+
Sbjct: 1066 GGFEARFQVQQVWDLA 1081