Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  344 bits (883), Expect = 2e-98
 Identities = 262/886 (29%), Positives = 430/886 (48%), Gaps = 76/886 (8%)

Query: 2   RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61
           ++  L+V + +S L  A   +++   A      A+G+ D N+L   +   + +   GL+ 
Sbjct: 22  QFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQP 81

Query: 62  VVGCRL--DLQDGM---------------SILVYPTDRAAYSRLTRLLTLG--KGRGGKA 102
           ++GC+L  D++D                 +I++       Y+RL  L++    +G G + 
Sbjct: 82  IIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQQ 141

Query: 103 NCIIHFDDVALYAEGLIGILVP-----DLA-----DEVCAVQLRKIAEVFGDRAYVSLCL 152
             I      A    GLI +        D+A       +   +L+ + E+FGDR YV L  
Sbjct: 142 TRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVEL-- 199

Query: 153 RRRPN-DQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCI-RTGMTIDDVGF 210
           +R  N D+   + + +LA +  +  + TN+  F         D +  +    M  DD  F
Sbjct: 200 QRHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRF 259

Query: 211 ERERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEEL---------VYQYPEE 261
                 D YLK  +EMA LF   PEAL  T+E+  RC F L+               PEE
Sbjct: 260 RLT--PDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEE 317

Query: 262 ALILGMTAQQSLQHYTWEGVRARYPE-GL-PTHVEKTIRH----ELALIETMKYAPYFLT 315
           A          L+    EG+  R  + G+ P + E+  R     EL +I+ MK+  YFL 
Sbjct: 318 A---ERAEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLI 374

Query: 316 VFSIVRYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDID 374
           V   +++A+   I +  GRGS A S V Y L IT +DP    LLFERF++ ER   PD D
Sbjct: 375 VADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFD 434

Query: 375 VDFEHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPE-------DLI 427
           +DF  +RREEVI+++ + YG ++ A   T    +A+ A+RDVG+ L++P         L+
Sbjct: 435 IDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLV 494

Query: 428 RTLSSGIWSWSETVGE--RQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLT 485
               +     S+ + E  R   E    P   RL   L +AQ++ G  R+ S H  G V+ 
Sbjct: 495 PNNPANPTPLSKAIEEEPRLREEAEKEPVVARL---LDIAQKIEGLYRHASTHAAGIVIG 551

Query: 486 HDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHE 545
              L  LVP+     +D  V +++   +E    +K D L L  LT +  A   + + +  
Sbjct: 552 DRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGK-RGI 610

Query: 546 DIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGP 605
            IDLA+IP +DP TY  + + +T+G FQ+ES      L  M+P    D++  VA+ RPGP
Sbjct: 611 HIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGP 670

Query: 606 IQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQ 665
           ++   +  Y  R+ G+E++E   P+++ +L +T GV ++QE  M++A V +G++ GEAD 
Sbjct: 671 MEN--IPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADL 728

Query: 666 LRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFAL 725
           LR++M   K    + + + + V+G ++NG +K  A+  F  L  F +YGF +SHAA++A+
Sbjct: 729 LRRAMGK-KIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAI 787

Query: 726 IAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLE 785
           ++Y + Y+K ++P  F AA +              +DA   G++V    +  S       
Sbjct: 788 VSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHF--- 844

Query: 786 PIDGSGGHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRR 831
               +G + +   +  ++G+  +    IVA R D PF S++D   R
Sbjct: 845 ---ETGDNRIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLR 887