Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

 Score =  915 bits (2365), Expect = 0.0
 Identities = 492/1036 (47%), Positives = 676/1036 (65%), Gaps = 18/1036 (1%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62
            YAEL   ++FSF R ASSA+ELF  AR  G +AL + D  +LAGIVRA +A++   LRL+
Sbjct: 13   YAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLRLI 72

Query: 63   VGCRLDLQDGMSILVYPTDRAAYSRLTRLLTLGKGRGGKANCIIHFDDVALYAEGLIGIL 122
            VG  + L DG  +++   +   Y  L  L+T  + R  K    +  DD+ L+ +GL+ + 
Sbjct: 73   VGSEVQLCDGPKLVLLVENLTGYQNLCALITRARRRAEKGAYQLFRDDLLLHHQGLLALW 132

Query: 123  VP-DLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQLQLHELTNLAVKHRVKTIVTND 181
            V  D  D      LR    VF +R ++++ L R  +D ++L  L  LA    ++ +   D
Sbjct: 133  VAADSGDTATGAWLRS---VFAERLWLAVHLHRGSDDAVRLQRLRALAADVGIRAVACGD 189

Query: 182  VLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPPEEMARLFPAYPEALARTM 241
            V  H  GRR LQD +T IR    + + G     + +R+L+   ++A L+P   + LA T+
Sbjct: 190  VHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERHLRSQAQLAELYPL--DLLAETL 247

Query: 242  EIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRARYPEGLPTHVEKTIRHEL 301
             I  RC+F L EL YQYP E +  G T    L+    +G+  R+P+G    V   +  EL
Sbjct: 248  VIARRCQFDLSELNYQYPRELVPEGHTPASWLRELCEQGMPLRWPDGPSGKVRDVLAKEL 307

Query: 302  ALIETMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYVLGITSIDPETNDLLFER 361
             LIE + Y  YFLTV  IV +ARSQ ILCQGRGSAANS VC+VLGIT +DP  + LLFER
Sbjct: 308  GLIEELGYESYFLTVHDIVAFARSQRILCQGRGSAANSVVCFVLGITELDPMKHHLLFER 367

Query: 362  FVSQERDEPPDIDVDFEHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALD 421
            F+S+ER+EPPDIDVDFEH+RREEVIQ++++ YG  +AAL + V  Y A GA+RDV +AL 
Sbjct: 368  FLSRERNEPPDIDVDFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALG 427

Query: 422  LPEDLIRTLSSGIWSWSETVGERQ-VRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPG 480
            LP D +  L+     WS+ + + Q + E G       L   L LA +L+G PR+LSQHPG
Sbjct: 428  LPADQVDALAKCCGRWSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPG 487

Query: 481  GFVLTHDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALIS 540
            GFV++   LD LVP+E A M +R VI+WDKDD++ +  LKVDVLALGML+ + + F  + 
Sbjct: 488  GFVISQQPLDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQ 547

Query: 541  EHKHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAI 600
             H+   + LATIP EDPATYAMI +A+T+G FQIESRAQM+MLPR++P+ FYDLVI+VAI
Sbjct: 548  HHRGRHLTLATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAI 607

Query: 601  VRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTG 660
            VRPGPIQGDMVHPYLRRR  +E V YP+P+L+ V  +TLGVPLFQE  M +AMV A +T 
Sbjct: 608  VRPGPIQGDMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTP 667

Query: 661  GEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHA 720
            GEADQLR+SMA +K  GG+   +++LV GM+RNGYT  FAE+ F Q++GFGSYGFPESHA
Sbjct: 668  GEADQLRRSMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHA 727

Query: 721  ASFALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRW 780
            ASFAL+ YAS+++KC+ P +F  AL+NS PMGFY+P Q++++AR  G+EVRP+ +  S W
Sbjct: 728  ASFALLCYASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDW 787

Query: 781  DCMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVPVASLV 840
            DC LEP D  G  A+R+G+RLVRGLA ADA R+  AR+  P+ +V+D+  R+G+   +  
Sbjct: 788  DCTLEP-DAEGTLAIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAGLDARARA 846

Query: 841  ELAEADAFLPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQMTD 900
             LA+  A L +L+ +R  A W + A++ + LPLF       A   A  EEP V+L   T 
Sbjct: 847  RLADGGA-LRALASDRHQARWQVAAVQPQ-LPLF-------ADVQALPEEP-VQLPVPTV 896

Query: 901  GQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPG 960
            G++++ DY   G TL  HPL  +R  L      + ++      G  +  AGLV+ RQRP 
Sbjct: 897  GEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQ 956

Query: 961  SAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQREGEVVHLVAQQLF 1020
            +A GV F+T+EDE G+ N+VVW  L ER RR ++G+ ++ ++GR+++E  V HL+A++L 
Sbjct: 957  TASGVTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRLEQENGVRHLIARRLE 1016

Query: 1021 DLSADLSSLAERDGAF 1036
            D+S  L  L  R   F
Sbjct: 1017 DVSPLLQGLDVRSRDF 1032