Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

 Score =  361 bits (926), Expect = e-103
 Identities = 298/1084 (27%), Positives = 500/1084 (46%), Gaps = 94/1084 (8%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62
            +  L+V + FS +      + L      M + A+ + D++++  +V+  + +   G++ +
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 63   VGCRLDLQDG------MSILVYPTDRAAYSRLTRLLTLGKGRGGKANCII-HFDDVALYA 115
             G  L L           I     D   Y  LT L++ G   G +   +I   + +A  +
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124

Query: 116  EGLIGI-----------LVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQLQLHE 164
            EGLI +           L+    DE  A+ L+    +F +R YV +    R  D+  +H 
Sbjct: 125  EGLIALSAGKEGDIGMALLAGRQDEAEAL-LQDWMGMFPERFYVEVQRTNRARDEEYVHA 183

Query: 165  LTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPPE 224
               LA K     + TNDV F +       +   CI  G T+DD    R     +YLK  E
Sbjct: 184  AVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAE 243

Query: 225  EMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRAR 284
            EMA LF   P+A+A T+EI +RC   ++   Y  P+     GM     L+H   EG+  R
Sbjct: 244  EMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEER 303

Query: 285  Y-----PEGLPTHVEK------TIRHELALIETMKYAPYFLTVFSIVRYARSQGI-LCQG 332
                   E  P + EK       ++ EL +I  M +  YFL V   +++A++  + +  G
Sbjct: 304  LAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPG 363

Query: 333  RGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKT 392
            RGS A S V YVL IT +DP   DLLFERF++ ER   PD DVDF  + R+ VI ++ + 
Sbjct: 364  RGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEA 423

Query: 393  YGHDKAALCSTVTRYRAKGAIRDV----GKALDLPEDLIRTLSSGIWSWSETVGERQ--V 446
            YG +  +   T     AK  +RDV    GK+  L + L + +   +    E   E++  +
Sbjct: 424  YGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEIL 483

Query: 447  RELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIEPATMADRQVI 506
            R+     +D R    + L  +L G  R   +H GG V+   +L D  PI         V 
Sbjct: 484  RDFLKGDEDAREIWDMAL--KLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVT 541

Query: 507  EWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHE----DIDLATIPQEDPATYAM 562
            ++DKDD+EA   +K D L L  LT +  A  +I+  + +    D+++  IP +D  TY +
Sbjct: 542  QFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYEL 601

Query: 563  IRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKE 622
            ++KA+T   FQ+ESR    ++ ++KP    DL+  VA+ RPGP+Q  MV  ++ R+ G+ 
Sbjct: 602  LQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA 661

Query: 623  KVEYPTPE-----LEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677
            ++ YP  +     L+ VL  T G+ L+QE  M++A V AG+T G AD LR++M   K   
Sbjct: 662  ELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPE 720

Query: 678  GVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCYF 737
             +++ +   + G + N    + A   F  +E F  YGF +SH+A++ L++Y + ++K ++
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 738  PDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVRL 797
            P  F AA+L++          +V + R   + +    +N S +   +   DG     +  
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNN-DG----RIVY 835

Query: 798  GMRLVRGLATADAARIVAARAD-EPFTSVDDMWRRSGVPVASLVELAEADAFLPSLSLER 856
            G+  ++G+       IV ARA   PF  + D   R  +     V     DA + S +L+R
Sbjct: 836  GLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDL---KRVNKRTLDALVRSGALDR 892

Query: 857  -----RDALWAIKALRDEPLPLFTAAADREARAIAEQ-----EEPEVEL----------- 895
                  D + A  A  D       +A   EA   AEQ     +   V+L           
Sbjct: 893  LGPHFHDEIKAYHANIDINRATLLSALG-EAIKAAEQAAHTADSGHVDLFGSMFDAADVD 951

Query: 896  --------RQMTDGQNVVEDYSHTGLTLREHPLRFMRDDL---AKRRIVTCAQAMTAHDG 944
                    R++T  + +  +    GL L  HP+     ++   A++RIV    +      
Sbjct: 952  VYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTI 1011

Query: 945  QWLMAAGLVLVRQRPGSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGR 1004
              ++ A L +++ + G   G  F+T++D +G     ++   F  ++ ++   +M+ + G 
Sbjct: 1012 AGMIIA-LRVMKNKKGDKMG--FVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGE 1068

Query: 1005 IQRE 1008
            +  +
Sbjct: 1069 VSND 1072