Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1188 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  325 bits (834), Expect = 1e-92
 Identities = 265/939 (28%), Positives = 434/939 (46%), Gaps = 90/939 (9%)

Query: 3   YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62
           +  L++ T FS +   +  +++ A A   G  AL + D ++L G V+  + +R  G++ +
Sbjct: 2   FTHLRLHTEFSVVDGTNRIDDVVAAAAADGQPALAITDLSNLFGAVKFYKEARGAGVKPI 61

Query: 63  VGCRLDLQDGMS----------------ILVYPTDRAAYSRLTRLLTLGKGRG-GKANCI 105
           +G  + LQ                     L+   D+  Y  L+ LL     R  G+   +
Sbjct: 62  IGAEVLLQGFTEETPGAMPGSQQAPVPRALLLVQDKQGYLNLSELLARAWTRNDGRGQAL 121

Query: 106 IHFDDVALYAEGLIGI-----------LVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRR 154
           +  D +     GLI I           L+   A     V L+ ++ +F  R Y+ L    
Sbjct: 122 VQRDWLQECNAGLIMISGAQAGPVGQALMQGDAQRAADVALQ-LSSIFTHRFYIELQRAG 180

Query: 155 RPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERER 214
           R +D+  + +   LA +  +  + T+ V F E    +  +   CI  G  + +    R  
Sbjct: 181 RADDERHVAQAVQLAARLHLPVVATHPVQFLEADDYEAHEARVCIAEGEILGNNRRVRRF 240

Query: 215 HADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPE--EALILG--MTAQ 270
             ++Y K   +M  LF   P ALA ++EIV RC  +L     Q P     LI G  M   
Sbjct: 241 TREQYFKSAAQMQALFADVPSALANSVEIVRRCNLTLVLGKPQLPNFPTPLIDGVPMPMA 300

Query: 271 QSLQHYTWEGVRAR----YPEGL------PTHVEKTIRHELALIETMKYAPYFLTVFSIV 320
              +  ++EG+  R    YP+        P +VE+ +  E+  I  M +  YFL V   +
Sbjct: 301 DFFRQSSFEGLEERLAHLYPDTAKRDAERPRYVER-LEFEINTILNMGFPGYFLIVGDFI 359

Query: 321 RYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEH 379
            +A++ G  +  GRGS A S V Y L IT +DP   +LLFERF++ ER   PD D+DF  
Sbjct: 360 NWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 419

Query: 380 ERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPE---DLIRTLSSGIWS 436
             R+ VI ++   YG +  +  +T     A+ AIRDVG+ LD      D I  L      
Sbjct: 420 TNRDRVIDYVKDKYGKEAVSQIATFGTLAARAAIRDVGRVLDFSYGFCDGISKLIPNKPG 479

Query: 437 WSETV---------GERQVRELGLNP--------DDRRLTLTLRLAQQLMGAPRNLSQHP 479
            S T+         G++    + + P        +D   TL + LAQ+L G  RN+  H 
Sbjct: 480 MSVTLQYPPAQKKEGDKNNYAIEMEPVLAERIQKEDDVKTL-IELAQKLEGMTRNIGMHA 538

Query: 480 GGFVLTHDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCM--AKAFA 537
           GG ++   +L D  P+     ++  V ++DKDD+EA+  +K D L L  LT +  A+ F 
Sbjct: 539 GGVLIAPGKLTDFCPLYAQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 598

Query: 538 LISEHKHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQ 597
           +      E+     +P  D   YA+  +  T   FQ ESR    ML   KP    DL+  
Sbjct: 599 MKRHPGQENFRFEDVPLNDAKVYALFSRGQTEAVFQFESRGMQGMLKDAKPSRLEDLIAL 658

Query: 598 VAIVRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAG 657
            A+ RPGP+  D++  ++ R+ GKE +EYP P +  +L +T G+ ++QE  M+ A +  G
Sbjct: 659 NALYRPGPM--DLIPSFVNRKHGKETIEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGG 716

Query: 658 FTGGEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPE 717
           ++ G AD LR++M   K    ++  ++    G  +N  ++E A++ F  +E F  YGF +
Sbjct: 717 YSLGGADMLRRAMGK-KKAEEMAEHREIFRAGAAKNDISQEKADEVFDLMEKFAGYGFNK 775

Query: 718 SHAASFALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINR 777
           SHAA+++L+AY + ++K ++   F  A +  +         +  DA++ G+      +NR
Sbjct: 776 SHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGISFEAPDVNR 835

Query: 778 SRWDCMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAA--------RADE--PFTSVDD 827
                  EPI      ++R G+  ++G        IVAA        R DE  PF S+ D
Sbjct: 836 GFH--RFEPITNK---SIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGDETGPFKSLFD 890

Query: 828 MW---RRSGVPVASLVELAEADAFLPSLSLERRDALWAI 863
                 R+ +   ++  L +A AF  S++L R + L ++
Sbjct: 891 FCVRVDRTRLNKRTVEALIKAGAF-DSMNLNRAEMLASV 928