Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1160 a.a., DNA polymerase III subunit alpha from Escherichia coli ECRC101

 Score =  378 bits (970), Expect = e-108
 Identities = 301/1077 (27%), Positives = 502/1077 (46%), Gaps = 100/1077 (9%)

Query: 2    RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61
            R+  L+V + +S +   +    L   A  +G+ AL + D  +L G+V+   A    G++ 
Sbjct: 5    RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64

Query: 62   VVGCRLDLQDGM------SILVYPTDRAAYSRLTRLLTLGKGRG-GKANCIIHFDDVALY 114
            +VG   ++Q  +       + V   +   Y  LT L++    RG G A  II  D +   
Sbjct: 65   IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124

Query: 115  AEGLI---GILVPD-----------LADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQL 160
             EGLI   G  + D           L DE  A       E F DR ++ L    RP+++ 
Sbjct: 125  NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY----EEHFPDRYFLELIRTGRPDEES 180

Query: 161  QLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYL 220
             LH    LA    +  + TNDV F +       ++   I  G T+DD    R     +Y+
Sbjct: 181  YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240

Query: 221  KPPEEMARLFPAYPEALARTMEIVERCRFSL---EELVYQYPEEALILGMTAQQSLQHYT 277
            +  EEM  LF   PEALA T+EI +RC  ++   E  + Q+P       M+ +  L    
Sbjct: 241  RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG----DMSTEDYLVKRA 296

Query: 278  WEGVRARYPEGLPTHVEKTIRH---------ELALIETMKYAPYFLTVFSIVRYARSQGI 328
             EG+  R     P   E+  R          EL +I  M +  YFL V   +++++  G+
Sbjct: 297  KEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356

Query: 329  -LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERREEVIQ 387
             +  GRGS A S V Y L IT +DP   DLLFERF++ ER   PD DVDF  E+R++VI+
Sbjct: 357  PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416

Query: 388  WIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSS------GIWSWSETV 441
             +   YG D  +   T     AK  IRDVG+ L  P   +  +S       G+       
Sbjct: 417  HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476

Query: 442  GERQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIEPATMA 501
             E Q+ E  +   D  +   + +A++L G  RN  +H GG V+   ++ D  P+      
Sbjct: 477  AEPQLPE--IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534

Query: 502  DRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHED----IDLATIPQEDP 557
               V ++DK D+E    +K D L L  LT +  A  +I++ + ++    +D+A IP +D 
Sbjct: 535  KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594

Query: 558  ATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRR 617
             ++ M+++++T   FQ+ESR    ++ R++P  F D++  VA+ RPGP+Q  MV  ++ R
Sbjct: 595  KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654

Query: 618  REGKEKVEYPTPE-----LEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672
            + G+E++ YP  +     L+ VL  T G+ L+QE  M++A V +G+T G AD LR++M  
Sbjct: 655  KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714

Query: 673  FKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732
             K    +++ +     G  +NG   E A K F  +E F  YGF +SH+A++AL++Y + +
Sbjct: 715  -KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773

Query: 733  IKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGG 792
            +K ++P  F AA++ +          +V +    G+++ P  IN   +   +   DG   
Sbjct: 774  LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-DGE-- 830

Query: 793  HAVRLGMRLVRGLATADAARIVAAR-ADEPFTSVDDMWRRSGVPVAS---LVELAEADAF 848
              +  G+  ++G+       I+ AR     F  + D+  R+     +   L +L  + AF
Sbjct: 831  --IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888

Query: 849  LPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIA--------------EQEEPEVE 894
                     D L   +A     L     AAD+ A+A A              EQ E    
Sbjct: 889  ---------DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA 939

Query: 895  LRQMTDGQNVVEDYSHT-GLTLREHPLRFMRDDLAKRRIVTCAQAMTAHD---GQWLMAA 950
              Q    Q V++    T GL L  HP+     ++   R V   +    H    G+ + AA
Sbjct: 940  SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--ERYVGGVRLKDMHPTERGKVITAA 997

Query: 951  GLVLVRQRPGSAKG--VMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRI 1005
            GLV+  +   + +G  +   T++D +G   ++++    ++ + ++    ++ ++G++
Sbjct: 998  GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQV 1054