Pairwise Alignments

Query, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 303 a.a., PCP degradation transcriptional activation protein from Xanthobacter sp. DMC5

 Score =  119 bits (297), Expect = 1e-31
 Identities = 96/298 (32%), Positives = 150/298 (50%), Gaps = 12/298 (4%)

Query: 6   LDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPR 65
           LDLNLLV L+AL+ ER +T AA R++LSQPA+SA +ARLR  F D L     R + PT +
Sbjct: 6   LDLNLLVTLEALLAERNVTRAAARLHLSQPAVSAQLARLRDLFDDPLLVPARRGMTPTVK 65

Query: 66  AEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVAREAPG 125
           A  LA  +R AL  ++ ++ A D  +PA +D    I  SD++       +V  +   APG
Sbjct: 66  AVELAGPLRAALDQLRATLEARD-FDPATADLTVTIACSDYIQAAVVMPLVVALRARAPG 124

Query: 126 VSFELLPLDDD-PHELLRRGDVDFLIFPDVFMSSAHPKAK-LFDEALVCVGCPTNKKLLG 183
           V   +  L  D   + L  G+ D L+      + AH + + LF E  V +G   + +L  
Sbjct: 125 VRVAVRHLMPDLIEQQLASGETD-LVLTTPRPTQAHLRTQHLFAETYVLIGRRGHPRLRR 183

Query: 184 NISFETYMSMGHV-AAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLIPRLLSGTNRI 242
            +S E Y  + HV  +  G + +  V++  L   G  R + +    F  IP +++ ++ +
Sbjct: 184 GLSIEDYAELEHVIVSPSGGQFRTPVDEG-LAALGHRRSVVMSAASFLFIPEIVAASDVV 242

Query: 243 ATLPLRLVKYFEQTIPLRIVTSPLPPLF--FTEAIQWPALHNTDPGNIWLREILLQEA 298
           A +P RL++      P R+V   LP L   F   + W    +   G  WLR ++ + A
Sbjct: 243 ALVPRRLLR----DPPARLVMIELPWLAEGFDVDLLWHERTHGHAGQRWLRALIAEVA 296