Pairwise Alignments

Query, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 302 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  110 bits (274), Expect = 5e-29
 Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 27/310 (8%)

Query: 4   RGLDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPT 63
           R +D+NLLV  +ALM E+ LT  A ++ + QPA+SAA+ RLR  F D L    GR + PT
Sbjct: 7   RRVDMNLLVIFEALMFEKNLTRVAEKLFMGQPAVSAALGRLRDLFDDPLLLRNGRGMEPT 66

Query: 64  PRAEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVAREA 123
           PRA A+   ++ A+  I  +V      +P+ S   FRI LSD      F  ++ ++  EA
Sbjct: 67  PRAVAILKELQPAMDTISGAVSRAKDFDPSTSCAVFRIGLSDDAEFGLFPPLLSQLREEA 126

Query: 124 PGV-------SFELLPLDDDPHELLRRGDVDFLIFPDVFMSSAHPKAKLFDEALVCVGCP 176
           PG+       ++ L+        LL  G++   +     + +   + KL D     + C 
Sbjct: 127 PGIIVVVRRANYLLM------SSLLASGEITVGVSYTTELPANAKRKKLRD-----IPC- 174

Query: 177 TNKKLLGN-----ISFETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTL 231
             K L G+     ++ + Y    H    F  ++  +++   L   G  RR+ L VP F+ 
Sbjct: 175 --KVLRGDDGAAPLTLDDYCERPHAMVSFSGDLSGNID-LDLARIGRARRVVLAVPQFSG 231

Query: 232 IPRLLSGTNRIATLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLR 291
           +  LL+GT  IAT+P        +   LR    P        ++ W  +H+ DP   WLR
Sbjct: 232 LRALLAGTQIIATVPDYAACALTEGTALRAEDPPFAIDAAELSMVWSGVHDNDPAERWLR 291

Query: 292 EILLQEASRI 301
             + +  +R+
Sbjct: 292 ARIGEHMARV 301