Pairwise Alignments

Query, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 304 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  117 bits (293), Expect = 3e-31
 Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 29/301 (9%)

Query: 4   RGLDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPT 63
           R +DLNLL+  + LM ER +T AA ++ L QPA+SAA++RLR  F D LF   GR + P+
Sbjct: 7   RRVDLNLLIVFETLMHERSVTRAAEKLFLGQPAISAALSRLRGLFDDPLFVRTGRSMEPS 66

Query: 64  PRAEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVAREA 123
            RA  +   +  AL  I  +V      +PA S   FRI LSD +      ++++R+  EA
Sbjct: 67  ARAVEIFALLSPALDSISTAVSRAAEFDPATSTAVFRIGLSDDVEFALLPQLLKRLRAEA 126

Query: 124 PG-------VSFELLPLDDDPHELLRRGDVDFLIFPDVFMSSAHPKAKLFDEALVCVGCP 176
           PG       V++ L+P       LL  G++   +     +  A+ K K+   +L      
Sbjct: 127 PGIVLVVRRVNYILMP------GLLASGEISIGVSYTADL-PANAKRKVLRRSL------ 173

Query: 177 TNKKLL------GNISFETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFT 230
              KLL      G++S + + +  H    F  ++   +++  L +    R + L VP F 
Sbjct: 174 --PKLLRADSVPGSLSLDDFCARPHALVSFAGDLSGFIDE-ELEKLDRKRHVVLAVPQFN 230

Query: 231 LIPRLLSGTNRIATLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWL 290
            +  LL+GT+ +AT+P    +       LR    PLP   F   + W    + DPG  WL
Sbjct: 231 GLGTLLAGTDILATVPDYAAEALTSAGGLRAEDPPLPVRSFELHMAWRGSQDNDPGERWL 290

Query: 291 R 291
           R
Sbjct: 291 R 291