Pairwise Alignments

Query, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 304 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  124 bits (310), Expect = 4e-33
 Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 18/304 (5%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           ++ + +DLNLL+  D ++ E++++A A  + LSQPA+S A+ARLR   GDELF    R +
Sbjct: 1   VQLKDIDLNLLLVFDRMLAEKRVSAVAESLGLSQPAISNALARLRKLLGDELFLRTARGM 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVA 120
            PTP A  LA  V  A+  +  ++      +PA S R F + ++D   + F  +++E ++
Sbjct: 61  EPTPFALQLAEPVAYAMGALHTALNQQVVFDPATSTRSFTLAMTDIGEIYFTPKLMEALS 120

Query: 121 REAPGVSFELLPLD--DDPHELLRRGDVDFLIFPDVFMSSAHPKAKLFDEALVCV---GC 175
             APGV+   L  +   +  + L  G VD  I     + +   + +LF +  VC+     
Sbjct: 121 VAAPGVTVSTLRNNTATNLRDELEAGHVDIAIGLLPQLKAGVFQRRLFLQQYVCLFSQAH 180

Query: 176 PTNKKLLGNISFETYMSMGHV---AAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLI 232
           P  KK   ++S + + +  HV   AA  G      V    +   G  RRI+L VP F  I
Sbjct: 181 PLAKK--RSVSLKDFSAADHVQVLAAGTGHGKADDV----MAAQGIQRRIKLRVPHFVAI 234

Query: 233 PRLLSGTNRIATLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQ--WPALHNTDPGNIWL 290
             +L  ++ IAT+P RL +   +  P  +V  P P      AI   W A  + DPGN W+
Sbjct: 235 GHILHSSHMIATVPERLAQSIAE--PFGLVWRPHPVALPQIAINLFWHAKAHRDPGNQWM 292

Query: 291 REIL 294
           R +L
Sbjct: 293 RGVL 296