Pairwise Alignments

Query, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 303 a.a., Nodulation protein D (transcriptional regulator, LysR family) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  190 bits (483), Expect = 3e-53
 Identities = 107/301 (35%), Positives = 163/301 (54%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           +R   LDLN LV LDA++    ++ AA  ++LSQPA+SAA+A+ R YFGD L    GR L
Sbjct: 1   VRVNKLDLNQLVLLDAMLATASVSKAAGLVHLSQPAVSAALAKFRAYFGDPLLVPHGRRL 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVA 120
             TP A +L   VRD LL +Q        + P++ +R+  I+ SD++  +  A + +R  
Sbjct: 61  TLTPFAHSLVEPVRDLLLQVQALTRRRPEIEPSRIERQITIVGSDYIQNILLAPLFQRAE 120

Query: 121 REAPGVSFELLPLDDDPHELLRRGDVDFLIFPDVFMSSAHPKAKLFDEALVCVGCPTNKK 180
           +EAPG+ FE+  +     E L +GDVD ++     +S  HP   +F +   C+    N +
Sbjct: 121 KEAPGLRFEVRSISGYLSEELDQGDVDLVVSLASGVSDRHPSEIVFRDTFSCLAWTGNTR 180

Query: 181 LLGNISFETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLIPRLLSGTN 240
           +   +S   Y+S+GHVA   GR   P+++Q  + E G  RRIE+ +P FT +P  L GT 
Sbjct: 181 VNKRLSKAQYLSLGHVAVLLGRGRVPTLDQIAMDELGLERRIEVHIPSFTTMPVYLVGTE 240

Query: 241 RIATLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLREILLQEASR 300
           RI TL   L     +  P+R++  P+P      A+QW    + DP   W R +L +  S 
Sbjct: 241 RIGTLQTHLANALARQWPVRVMPCPIPIAPIITAVQWHRYQSLDPAISWTRGVLRELGSS 300

Query: 301 I 301
           +
Sbjct: 301 L 301