Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 303 a.a., PCP degradation transcriptional activation protein from Xanthobacter sp. DMC5

 Score =  114 bits (284), Expect = 4e-30
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 18/306 (5%)

Query: 6   LDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPR 65
           LDLNLLV L+AL+ +R+VT AA  ++LSQPA+S+ +ARLR  F D L     R +  T +
Sbjct: 6   LDLNLLVTLEALLAERNVTRAAARLHLSQPAVSAQLARLRDLFDDPLLVPARRGMTPTVK 65

Query: 66  AEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPG 125
           A  LA  +R AL  ++ ++ + D F+PA +D    I  SD++       +V  +   APG
Sbjct: 66  AVELAGPLRAALDQLRATLEARD-FDPATADLTVTIACSDYIQAAVVMPLVVALRARAPG 124

Query: 126 VSF---ELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAK-LFDQTLVSVGCLTNEQL 181
           V      L+P  D  ++ L  GE D L+      +  H + + LF +T V +G   + +L
Sbjct: 125 VRVAVRHLMP--DLIEQQLASGETD-LVLTTPRPTQAHLRTQHLFAETYVLIGRRGHPRL 181

Query: 182 LGDLSFERYMSMGHV-AAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTK 240
              LS E Y  + HV  +  G   +  V++  L   G++R + +    F  IP +++ + 
Sbjct: 182 RRGLSIEDYAELEHVIVSPSGGQFRTPVDEG-LAALGHRRSVVMSAASFLFIPEIVAASD 240

Query: 241 RIAIIPLRLANHFAKSIPLRIVKHPLPLLS--FTEAVQWPALHNKDQASIWMREILLDEA 298
            +A++P RL     +  P R+V   LP L+  F   + W    +      W+R ++ + A
Sbjct: 241 VVALVPRRL----LRDPPARLVMIELPWLAEGFDVDLLWHERTHGHAGQRWLRALIAEVA 296

Query: 299 ARIAAP 304
              AAP
Sbjct: 297 G--AAP 300