Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 311 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  100 bits (249), Expect = 4e-26
 Identities = 81/307 (26%), Positives = 144/307 (46%), Gaps = 10/307 (3%)

Query: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60
           M    +DLNL +  DA+ T+ ++T A + + ++QPA+S+A+ARLR  F D LF    + +
Sbjct: 1   MNLSKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARLRETFNDPLFVRTAQGM 60

Query: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120
           + TP A+ +   +R+AL  ++ S+    +FNP Q+ + +RI ++D    V    + +R+ 
Sbjct: 61  VPTPMAQNIIGPVRNALSLLRVSVQESRIFNPQQAAKTYRISMTDLTEAVILPLLFQRLR 120

Query: 121 REAPGVSFE-LLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNE 179
           R AP V  E  L       + L  G +DF +   +         KL +   V        
Sbjct: 121 RLAPTVVIESFLSKRRETTKELAAGRLDFAVDAPLNTDPQVRHVKLMEDRYV-CAMRKGH 179

Query: 180 QLLG--DLSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLS 237
            L G   L+ + Y+ + H+     R     V+   L + G +R+I L    + +   +L 
Sbjct: 180 PLAGKDKLTLDDYLGLTHIHISSRRNGLGHVD-LALGKMGLQRKIALRSQHYLMASQVLQ 238

Query: 238 GTKRIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEA-VQWPALHNKDQASIWMREILLD 296
            T  +  +P R    FA+   L     P+  +   E  + W    ++D A+ WMRE +++
Sbjct: 239 QTDMVMTVPER----FARRHELHWFNLPVNDVPPVETHLYWHESTDQDPANRWMREQMIE 294

Query: 297 EAARIAA 303
              ++ A
Sbjct: 295 LCQQVTA 301