Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 298 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  105 bits (262), Expect = 1e-27
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 1/289 (0%)

Query: 6   LDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPR 65
           LDL  L   D +    +V+ AA  + ++Q A S+A+ +LR++F D LF    + +  TP 
Sbjct: 4   LDLEWLAVFDEVYKTGNVSKAAERLGMAQAAASTALNKLRAHFDDRLFTRTAQGMQPTPH 63

Query: 66  AEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPG 125
           AE + P +R+AL  +  +  +   F+PAQ+ R FRI ++D   +V    +++ +   APG
Sbjct: 64  AERIYPNLREALAQLAQAQGNRSSFDPAQAQRRFRICMTDISEVVLLPGLLDHLRHAAPG 123

Query: 126 VSFELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNEQLLGDL 185
           V  E           L+ GEVD  +     + +   +  LF Q  V +    + ++   L
Sbjct: 124 VHIETEIISTLSGRRLQDGEVDLAVGFMPQLDAGFYQQTLFMQNFVCLAAQNHPRIGARL 183

Query: 186 SFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKRIAII 245
           + +R+ +  H           ++    L   G KR + + +  F  +  +++ T+ + ++
Sbjct: 184 TRKRFEAEAHAVVSTS-GTGHAIVDTTLARLGLKRNVVVRLSSFLSVARIVAHTELLVVV 242

Query: 246 PLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREIL 294
           P  L    A   P+++++ P  L  +     W    + D  + W+R  L
Sbjct: 243 PRILGRVLATQEPVKLLEPPFALPDYAVKQHWHERFHADPGNAWLRRTL 291