Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 326 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  103 bits (257), Expect = 6e-27
 Identities = 93/322 (28%), Positives = 148/322 (45%), Gaps = 35/322 (10%)

Query: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60
           + F+ LDLNLL   D +M +R++T AAR+++++QPA+S+A+ RLR    DEL R  G  +
Sbjct: 3   VNFRTLDLNLLRVFDEVMAERNLTRAARNLSITQPAVSNALRRLREVLGDELVRRSGAGV 62

Query: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120
             TPRA AL P +RDAL  +Q ++   + F+ A +D  F + ++D         +V+   
Sbjct: 63  EPTPRALALWPTVRDALRQLQHTLAPGE-FDAATADTTFLLAMADATAAELIPGLVQIAE 121

Query: 121 REAPGVSFELLP-PDDNPDELLRRGEVDFLI--FPDVFMSSVHPKAKLFDQTLVSVGCLT 177
           +EAP +S  +LP    +P  +L   EVD  +  FP V  S          Q+ V V   T
Sbjct: 122 KEAPAISLRVLPLTTRDPRRMLELEEVDMAVGYFPAVIAS-----LAARGQSGVGVAFET 176

Query: 178 NEQLLGD---------------LSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRI 222
               LG                L+ + Y +  H+   F       ++Q  L   G +RRI
Sbjct: 177 QRLYLGQYVCVMRRGHPLANAPLTLDDYCAARHLLVSFSGRPYGFIDQ-TLGAMGRERRI 235

Query: 223 ELVVPGFNLIPPLLSGTKRIAIIPLRLANHF--AKSIPLRIVKHPLPLLS---FTEAVQW 277
            + V  F     +++ +  + ++P     HF     I  ++V   LP        +A+ W
Sbjct: 236 VVTVNQFFTAGRVVANSDLLTVLP----RHFVTVTGIGDQLVLRDLPFDQPPVHVDAI-W 290

Query: 278 PALHNKDQASIWMREILLDEAA 299
                   +  W+R  LL  AA
Sbjct: 291 HRRAQHGHSHEWLRTALLRSAA 312