Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 304 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  122 bits (305), Expect = 1e-32
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 16/308 (5%)

Query: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60
           ++ K +DLNLL+  D ++ ++ V+A A S+ LSQPA+S+A+ARLR    DELF    R +
Sbjct: 1   VQLKDIDLNLLLVFDRMLAEKRVSAVAESLGLSQPAISNALARLRKLLGDELFLRTARGM 60

Query: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120
             TP A  LA  +  A+  +  ++    +F+PA S R F + ++D   + F  K++E ++
Sbjct: 61  EPTPFALQLAEPVAYAMGALHTALNQQVVFDPATSTRSFTLAMTDIGEIYFTPKLMEALS 120

Query: 121 REAPGVSFELLPPD--DNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTN 178
             APGV+   L  +   N  + L  G VD  I     + +   + +LF Q  V   CL +
Sbjct: 121 VAAPGVTVSTLRNNTATNLRDELEAGHVDIAIGLLPQLKAGVFQRRLFLQQYV---CLFS 177

Query: 179 E----QLLGDLSFERYMSMGHV---AAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNL 231
           +         +S + + +  HV   AA  G      V    +   G +RRI+L VP F  
Sbjct: 178 QAHPLAKKRSVSLKDFSAADHVQVLAAGTGHGKADDV----MAAQGIQRRIKLRVPHFVA 233

Query: 232 IPPLLSGTKRIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMR 291
           I  +L  +  IA +P RLA   A+   L    HP+ L      + W A  ++D  + WMR
Sbjct: 234 IGHILHSSHMIATVPERLAQSIAEPFGLVWRPHPVALPQIAINLFWHAKAHRDPGNQWMR 293

Query: 292 EILLDEAA 299
            +L D  A
Sbjct: 294 GVLFDNFA 301