Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 311 a.a., Transcriptional regulator, LysR family from Sphingobium sp. HT1-2

 Score =  111 bits (277), Expect = 3e-29
 Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 14/311 (4%)

Query: 7   DLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPRA 66
           DLNLL    ALM +RSVT AA  + ++QPA+S+A++RLR   QD+LF  +   +  TP A
Sbjct: 4   DLNLLPIFVALMEERSVTRAAERMGMTQPALSNALSRLRLMLQDQLFVRERYGIQPTPIA 63

Query: 67  EALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPGV 126
             L+P I +AL  +  +++    F+P +++R F I  + ++  V    +V R+ + APG+
Sbjct: 64  LELSPLIAEALAQLDNAVLGQQAFDPVKAERLFTIAPNGYVEFVLVPAIVARLEKVAPGI 123

Query: 127 SFELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCL----TNEQLL 182
              L P     ++L+  G V       V    V P   L  Q L+  G      T+   +
Sbjct: 124 KLRLTP---YGNDLVETGVVSGTT-ALVLGRIVDPPDNLVVQHLMDEGLACAVRTDHPGV 179

Query: 183 GD-LSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKR 241
           GD ++ E++ +M HV       ++  + Q  L +   KR + + V  F     +++ T  
Sbjct: 180 GDVMTREQFETMKHVNIVPPGRMRAGLFQ-ALAQQQLKRDVAISVTNFFAAAEMVAVTDY 238

Query: 242 IAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMR----EILLDE 297
            A +P  +         L+++  P+ L SF   + W   +  D A  W+R    E+++D 
Sbjct: 239 CATLPTLICRQLMHDPRLKVLPAPVDLGSFPVEMAWHVRYRHDPAHRWLRALIGEVIIDF 298

Query: 298 AARIAAPRETA 308
             + AA   T+
Sbjct: 299 KDKTAATAMTS 309