Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 304 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  127 bits (320), Expect = 3e-34
 Identities = 88/295 (29%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 7   DLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPRA 66
           DLNLLV L+AL+ +RSVT AA  + +SQPA+S A+ARLR+ F D L        + T RA
Sbjct: 10  DLNLLVVLNALLDERSVTRAAMRLGMSQPAVSRALARLRALFSDALLVDGPGGYLLTSRA 69

Query: 67  EALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPGV 126
           E L P +R+ L  +   ++    F+P Q+    R+++ D    V   +++  +A +AP V
Sbjct: 70  EDLRPLLRNTLAGVS-ELLDGRTFDPMQATGSVRLLMLDLEAAVLAPRLIASLAVQAPAV 128

Query: 127 SFELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNEQLLGDLS 186
             +++PP   P E L    VD LI       +   K KL+    V++    +      L+
Sbjct: 129 DLQVVPPGLRPLEALEADAVDALIGVVEDAPAGVKKRKLYQDNFVTLMRAEHPTAARKLT 188

Query: 187 FERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKRIAIIP 246
            ER++ + HV        +  V++ +L   G KRR+++ VP F     + + +  +  +P
Sbjct: 189 LERFLELDHVVVSITGTGRAWVDE-ILARSGRKRRVKVRVPSFFAAVEIAARSDLVMTLP 247

Query: 247 LRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREILLDEAARI 301
             LA   A      +   PL L S   ++ W A H      +W+R  +    A I
Sbjct: 248 SSLARTAADMRRFVMASPPLDLGSVVISLAWHARHQDAPRHVWLRRTIAAAVADI 302