Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 301 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  110 bits (275), Expect = 4e-29
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 17/302 (5%)

Query: 6   LDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPR 65
           +D+NLLV  +ALM +R++T     + ++Q  +S+A+ARLR  F D L    GR +  TPR
Sbjct: 9   VDMNLLVLFEALMIERNLTRVGEKLFITQSTVSAALARLRELFDDPLLIRSGRAMEPTPR 68

Query: 66  AEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPG 125
           A  +   +  A+  I  +I     F+PA S   FR+ LSD      F  +++ +  EAP 
Sbjct: 69  AMQIFAELGPAMDVISAAISRAREFDPANSCNVFRLGLSDDAEFGLFPALLQALREEAPA 128

Query: 126 VS-------FELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTN 178
           +S       F L+P       LL  GE+   +     + +   + KL D   + V  L  
Sbjct: 129 ISVVVRRANFLLMP------GLLASGEISVGVSYTTDLPATAKRRKLRD---IGVRVLRA 179

Query: 179 EQLLGDLSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSG 238
           +   G L+ + Y +  HV   F   +  +++   L   G  R++ L VP F  +  LL  
Sbjct: 180 DDRPGPLTLDEYCARPHVMVSFSGDMSGNID-LDLARIGRCRKVVLAVPQFGSLRALLRN 238

Query: 239 TKRIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREILLDEA 298
           T+ IA +P   A   A    LR    P  +     ++ W    + D A  W+R+ +L   
Sbjct: 239 TELIATVPDYAACALADDGSLRADPAPFDITEAELSMVWSGAQDNDPAERWLRDRILQFM 298

Query: 299 AR 300
           AR
Sbjct: 299 AR 300