Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 299 a.a., CnmA from Pseudomonas putida KT2440

 Score =  119 bits (298), Expect = 9e-32
 Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 10/289 (3%)

Query: 10  LLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPRAEAL 69
           LL   D L   RSVT AA  +  SQP +S  +ARLR    D LF      +  TPRA+ L
Sbjct: 12  LLQLFDVLYQCRSVTRAAEQLGQSQPTISIWLARLREQLNDPLFVRTPGGMAPTPRADQL 71

Query: 70  APAIRDALLHIQFSIISWD-MFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPGVSF 128
               R+ L  ++  + +W+  F  A + R FR+ +SD   +     ++  +   APG+  
Sbjct: 72  IGPCREVLESLR-RLTAWEPQFIAATAQRRFRLCVSDASHITLLPSILNHLRSHAPGIRL 130

Query: 129 ELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNEQ--LLGD-L 185
           E    D N +  L  GE D  I    ++     +  LF+Q  V   CL+N Q   LGD +
Sbjct: 131 EAARIDGNTESALESGEADLAIGFVPWLGGGMYQQVLFEQDWV---CLSNPQHPRLGDGM 187

Query: 186 SFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKRIAII 245
           S ERY + GHV   FG   K  + +  L   G +RRI L +P F  +  ++  T  +  +
Sbjct: 188 SLERYRAEGHVQISFGTGQK--LLEAGLARAGIERRIMLELPAFLGLGKIIGTTDLLGTL 245

Query: 246 PLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREIL 294
           P  +    A    L++   P  +  FT    W A +++D  + W+RE++
Sbjct: 246 PRHIGQTLADMHGLQVHDCPFEVEGFTVKQHWHARYHQDNGNRWLREVV 294